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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41772

Subspecies differentiation in an enigmatic chaparral shrub species

PremiseDelimiting biodiversity units is difficult in organisms in which differentiation is obscured by hybridization, plasticity, and other factors that blur phenotypic boundaries. Such work is more complicated when the focal units are subspecies, the definition of which has not been broadly explored in the era of modern genetic methods. Eastwood manzanita (Arctostaphylos glandulosa Eastw.) is a w
Authors
Yi Huang, Glen R. Morrison, Alan Brelsford, Janet Franklin, Diana D Jolles, Jon Keeley, V Thomas Parker, Natalie Saavedra, Andrew C Sanders, Thomas Stoughton, Gregory A. Wahlert, Amy Litt

Hyperpigmented melanistic skin lesions of smallmouth bass Micropterus dolomieu from the Chesapeake Bay watershed

Hyperpigmented melanistic skin lesions (HPMLs) of smallmouth bass Micropterus dolomieu are observed in the Potomac and Susquehanna rivers, Chesapeake Bay watershed, USA. Routine, nonlethal population surveys were conducted at 8 sites on the mainstem Susquehanna River and 9 on the Juniata River, a tributary of the Susquehanna River, between 2012 and 2018, and the prevalence of HPMLs was documented.
Authors
Vicki S. Blazer, Kelsey T. Young, Geoffrey D. Smith, Adam Sperry, Luke R. Iwanowicz

Legacy and contaminants of emerging concern (CECs) in tree swallows along an agricultural to industrial gradient: Maumee River, OH

Exposure to multiple classes of contaminants, both legacy and contaminants of emerging concern (CECs), were assessed in tree swallow (Tachycineta bicolor) tissue and diet samples from 6 sites along the Maumee River, Ohio, USA, to understand both exposure and possible effects of exposure to those CECs for which there are little avian data. The 6 sites represented a gradient from intensive agricultu
Authors
Christine M. Custer, Thomas W. Custer, Paul Dummer, Sandra L. Schultz, Chi Yen Tseng, Natalie K. Karouna-Renier, Cole W. Matson

Safe work practices for working with wildlife

Most wildlife biologists, technicians, and veterinarians complete their tasks safely and uneventfully every day. However, some significant risks exist in this line of work, and injuries, illnesses, and accidental deaths among wildlife workers do occur. Aviation accidents (airplane and helicopter), drownings, and car and truck accidents are the most common causes of fatalities among wildlife worker
Authors
Tegwin Taylor, Danielle Buttke

Optimization of tidal marsh management at the Cape May and Supawna Meadows National Wildlife Refuges, New Jersey, through use of structured decision making

Structured decision making is a systematic, transparent process for improving the quality of complex decisions by identifying measurable management objectives and feasible management actions; predicting the potential consequences of management actions relative to the stated objectives; and selecting a course of action that maximizes the total benefit achieved and balances tradeoffs among objective
Authors
Hilary A. Neckles, James E. Lyons, Jessica L. Nagel, Susan C. Adamowicz, Toni Mikula, Brian Braudis, Heidi Hanlon

Managing plague on prairie dog colonies: Insecticides as ectoparasiticides

Human health practitioners and wildlife biologists use insecticides to manage plague by suppressing fleas (Siphonaptera), but insecticides can also kill other ectoparasites. We investigated effects of deltamethrin and fipronil on ectoparasites from black-tailed prairie dogs (Cynomys ludovicianus, BTPDs). In late July, 2018, we treated three sites with 0.05% deltamethrin dust and 5 sites with host-
Authors
David A. Eads, Alexis Yashin, Lauren Nobel, Michele Vasquez, Miranda Huang, Travis M. Livieri, Phillip Dobesh, Eddie Childers, Dean E. Biggins

Analysis of movement recursions to detect reproductive events and estimate their fate in central place foragers

Recursive movement patterns have been used to detect behavioral structure within individual movement trajectories in the context of foraging ecology, home-ranging behavior, and predator avoidance. Some animals exhibit movement recursions to locations that are tied to reproductive functions, including nests and dens; while existing literature recognizes that, no method is currently available to exp
Authors
Simona Picardi, Brian Smith, Matthew E. Boone, Peter C. Frederick, Jacopo G. Cecere, Diego Rubolini, Lorenzo Serra, Simone Pirrello, Rena R. Borkhataria, Mathieu Basille

Remarkable response of native fishes to invasive trout suppression varies with trout density, temperature, and annual hydrology

Recovery of imperiled fishes can be achieved through suppression of invasives, but outcomes may vary with environmental conditions. We studied the response of imperiled desert fishes to an invasive brown (Salmo trutta) and rainbow trout (Oncorhynchus mykiss) suppression program in a Colorado River tributary, with natural flow and longitudinal variation in thermal characteristics. We investigated t
Authors
Brian D Healy, Robert Schelly, Charles Yackulic, Emily Omana Smith, Phaedra E. Budy

Assessing the risks posed by SARS-CoV-2 in and via North American bats — Decision framing and rapid risk assessment

The novel β-coronavirus, SARS-CoV-2, may pose a threat to North American bat populations if bats are exposed to the virus through interaction with humans, if the virus can subsequently infect bats and be transmitted among them, and if the virus causes morbidity or mortality in bats. Further, if SARS-CoV-2 became established in bat populations, it could possibly serve as a source for new infection
Authors
Michael C. Runge, Evan H. Campbell Grant, Jeremy T. H. Coleman, Jonathan D. Reichard, Samantha E. J. Gibbs, Paul M. Cryan, Kevin J. Olival, Daniel P. Walsh, David S. Blehert, M. Camille Hopkins, Jonathan M. Sleeman

Development of a quantitative PCR assay for detecting Egeria densa in environmental DNA samples

Brazilian elodea (Egeria densa) is an invasive freshwater plant that demonstrates widespread ecological impacts in freshwater ecosystems and causes substantial economic damage. Here, we developed an environmental DNA assay for detection of E. densa to provide resource managers with a tool for early detection, identification, and monitoring of invasive populations.
Authors
Dorothy M. Chase, Lauren M Kuehne, Julian D. Olden, Carl Ostberg

Validating climate‐change refugia: Empirical bottom‐up approaches to support management actions

Efforts to conserve biodiversity increasingly focus on identifying climate‐change refugia – areas relatively buffered from contemporary climate change over time that enable species persistence. Identification of refugia typically includes modeling the distribution of a species’ current habitat and then extrapolating that distribution given projected changes in temperature and precipitation, or by
Authors
Cameron W. Barrows, Aaron R. Ramirez, Lynn C. Sweet, Toni Lyn Morelli, Constance I. Millar, Neil Frakes, Jane Rodgers, Mary Frances Mahalovich

Climate‐change refugia: Biodiversity in the slow lane

Climate‐change adaptation focuses on conducting and translating research to minimize the dire impacts of anthropogenic climate change, including threats to biodiversity and human welfare. One adaptation strategy is to focus conservation on climate‐change refugia (that is, areas relatively buffered from contemporary climate change over time that enable persistence of valued physical, ecological, an
Authors
Toni Lyn Morelli, Cameron W. Barrows, Aaron R. Ramirez, Jennifer M. Cartwright, David D. Ackerly, Tatiana D. Eaves, Joseph L. Ebersole, Meg A. Krawchuk, Benjamin Letcher, Mary Frances Mahalovich, Garrett Meigs, Julia Michalak, Constance I. Millar, Rebecca M. Quinones, Diana Stralberg, James H. Thorne