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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41756

Responses of native freshwater mussels to remediation to remove polychlorinated biphenyl-contaminated sediments in the upper Hudson River

The Hudson River, New York, was contaminated with polychlorinated biphenyls (PCBs) from two manufacturing plants over a period of approximately 30 years, and PCBs are still present in sediment and biota today. The river provides habitat for a variety of plants and animals, including native freshwater mussels. A remediation programme, consisting of dredging followed by the placement of backfilled s
Authors
Teresa J. Newton, Denise A. Mayer, James T. Rogala, Sean S. Madden, Brian R. Gray

Spatial distribution and diet of Lake Michigan juvenile lake trout

Most studies of Lake Michigan lake trout (Salvelinus namaycush) have focused on adults, with scant attention to juveniles (<400 mm). We explored the spatial distribution and diet of juvenile lake trout using U.S. Geological Survey September bottom trawl data (2015–2022) and stomach content information opportunistically collected since 2012 by various agencies using multiple gear types. Most juveni
Authors
Benjamin Scott Leonhardt, Ralph W. Tingley, Charles P. Madenjian, Lynn M. Ogilvie, Brian Roth, Jory L. Jonas, Jason B. Smith

Model-based surveillance system design under practical constraints with application to white-nose syndrome

Infectious diseases are powerful ecological forces structuring ecosystems, causing devastating economic impacts and disrupting society. Successful prevention and control of pathogens requires knowledge of the current scope and severity of disease, as well as the ability to forecast future disease dynamics. Assessment of the current situation as well as prediction of the future conditions, rely on
Authors
Gina Oh, Srikanth Aravamuthan, Ting Fung Ma, Juan Francisco Mandujano Juan Francisco
Reyes, Anne Ballmann, Trevor J. Hefley, Ian McGahan, Robin Russell, Daniel P. Walsh, Juntao Zhu

Isothermal recombinant polymerase amplification and CRIPSR (CAS12A) assay detection of Renibacterium salmoninarum as an example for wildlife pathogen detection in environmental DNA samples

Improving rapid detection methods for pathogens is important for research as we collectively aim to improve the health of ecosystems globally. In the northern hemisphere, the success of salmon (Oncorhynchus spp.) populations is vitally important to the larger marine, aquatic, and terrestrial ecosystems they inhabit. This has led to managers cultivating salmon in hatcheries and aquaculture to bolst
Authors
Erin D’Agnese, Dorothy M. Chase, Elizabeth Andruszkiewicz-Allan

Evolutionary and ecological correlates of thiaminase in fishes

Thiamine (vitamin B1) is required by all living organisms in multiple metabolic pathways. It is scarce in natural systems, and deficiency can lead to reproductive failure, neurological issues, and death. One major cause of thiamine deficiency is an overreliance on diet items containing the enzyme thiaminase. Thiaminase activity has been noted in many prey fishes and linked to cohort failure in sal
Authors
Freya Elizabeth Rowland, Cathy A. Richter, Donald E Tillitt, David Walters

Elevation, canopy cover and grass cover structure patterns of seedling establishment in a subtropical post-fire restoration

Ecological restoration is beneficial to ecological communities in this era of large-scale landscape change and ecological disruption. However, restoration outcomes are notoriously variable, which makes fine-scale decision-making challenging. This is true for restoration efforts that follow large fires, which are increasingly common as the climate changes.Post-fire restoration efforts, like tree pl
Authors
Christopher Warneke, Lars Brudvig, Makani Gregg, Sierra McDaniel, Stephanie G. Yelenik

Submersed macrophyte density regulates aquatic greenhouse gas emissions

Shallow freshwater ecosystems emit large amounts of greenhouse gases (GHGs), such as carbon dioxide (CO2) and methane (CH4), yet emissions are highly variable. The role that aquatic macrophytes play in regulating aquatic GHG emissions is uncertain despite their ability to dominate shallow waterbodies. Here, we studied the effects of submersed macrophyte (Ceratophyllum demersum) density on CO2 and
Authors
Meredith E. Theus, Nicholas E. Ray, Sheel Bansal, Meredith A. Holgerson

Movement behavior, habitat selection, and functional responses to habitat availability among four species of wintering waterfowl in California

Habitat selection analyses provide a window into the perceived value of habitats by animals and how those perceptions compare with other animals, change across time, or change in relation to availability (termed functional responses). Habitat selection analysis and functional responses can be used to develop strategies to avoid habitat limitations, guide habitat management, and set attainable cons
Authors
Cory T. Overton, Michael L. Casazza

Annual and inter-annual variability in the diffuse attenuation coefficient and turbidity in an urbanized Washington lake from 2013 to 2022 assessed using Landsat-8/9

Water clarity, defined in this study using measurements of the downwelling diffuse light attenuation coefficient (Kd) and turbidity, is an important indicator of lake trophic status and ecosystem health. We used in-situ measurements to evaluate existing semi-analytical models for Kd and turbidity, developed a regional turbidity model based on spectral shape, and evaluated the spatial and temporal
Authors
Jennifer A. Schulien, Tessa Julianne Code, Curtis L. DeGasperi, David Beauchamp, Arielle Tonus Ellis, Arni H. Litt

Impacts of acute and chronic suspended solids exposure on juvenile freshwater mussels

Construction activities may affect adjacent water systems by introducing increased levels of suspended solids into the water body and may subsequently affect the survival and growth of freshwater mussels. We tested three sediment types from sites in Missouri, including Spring River sediment (SRS), Osage River bank clay soil (ORC), and quarried limestone from Columbia (LMT). We prepared series of s
Authors
Wenyu Zhu, James L. Kunz, Eric Brunson, Christopher M. Barnhart, Henry Brown, Stephen E. McMurray, Andy Roberts, Christopher Shulse, Kathleen Trauth, Binbin Wang, Jeffery A. Steevens, Baolin Deng

Ammonia and aquatic ecosystems – A review of global sources, biogeochemical cycling, and effects on fish

The purpose of this review is to better understand the full life cycle and influence of ammonia from an aquatic biology perspective. While ammonia has toxic properties in water and air, it also plays a central role in the biogeochemical nitrogen (N) cycle and regulates mechanisms of normal and abnormal fish physiology. Additionally, as the second most synthesized chemical on Earth, ammonia contrib
Authors
Thea Margaret Edwards, Holly J. Puglis, Jonathan Lopez Duran, Lillian Bradshaw, Douglas B. Kent, Aida Farag