Skip to main content
U.S. flag

An official website of the United States government

Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41772

Second round of an interlaboratory comparison of SARS-CoV2 molecular detection assays used by 45 veterinary diagnostic laboratories in the United States

The COVID-19 pandemic presents a continued public health challenge. Veterinary diagnostic laboratories in the United States use RT-rtPCR for animal testing, and many laboratories are certified for testing human samples; hence, ensuring that laboratories have sensitive and specific SARS-CoV2 testing methods is a critical component of the pandemic response. In 2020, the FDA Veterinary Laboratory Inv
Authors
Kaiping Deng, Steffen Uhlig, Laura B. Goodman, Hon S. Ip, Mary Lea Killiam, Sarah Nemser, Jodie Ulaszek, Shannon Kiener, Matthew Kmet, Kirstin Frost, Karina Hettwer, Bertrand Colson, Kapil Nichani, Anja Schlierf, Andriy Tkachenko, Mothomang Mlalazi Oyinloye, Scott Andrew, Ravinder Reddy, Gregory H. Tyson

Collateral damage: Anticoagulant rodenticides pose threats to California condors

Anticoagulant rodenticides (ARs) are widespread environmental contaminants that pose risks to scavenging birds because they routinely occur within their prey and can cause secondary poisoning. However, little is known about AR exposure in one of the rarest avian scavengers in the world, the California condor (Gymnogyps californianus). We assessed AR exposure in California condors and surrogate tur
Authors
Garth Herring, Collin Eagles-Smith, Rachel Wolstenholme, Alacia Welch, Chris West, Barnett A. Rattner

Application of tail transmitters for tracking feral horses as an alternative to radio collars

Radio collars have been used to examine the spatial ecology of all North American ungulates, but are rarely used on feral horses due to concerns that they may cause injury. Due to public concerns for animal welfare, an alternative to radio collars for tracking feral horses, particularly stallions, over the short term would be useful. We developed a method of attaching a global positioning system (
Authors
Sarah R. B. King, Kathryn A. Schoenecker

The effects of prolonged drought on vegetation dieback and megafires in southern California chaparral

Drought contributed to extensive dieback of southern California chaparral, and normalized difference vegetation index before drought and near the end of the drought was used to estimate this dieback, after accounting for other disturbances recorded in aerial photographs. Within the perimeters of two megafires that occurred after the drought, the 2017 Thomas Fire and the 2018 Woolsey Fire, there ha
Authors
Jon Keeley, Theresa J Brennan-Kane, Alexandra D. Syphard

Open-source intelligence for conservation biology

Open-source intelligence (OSINT) evolved in spy agencies but now is rapidly changing many fields of study, from anthropology to zoology. Despite the fact that OSINT occasionally is used in conservation biology, there is little recognition that some tools and frameworks used by conservation professionals are drawn from this well-established field. The history and conceptual foundations of OSINT ste
Authors
Todd E. Katzner, Eve C. Thomason, Karrin Huhmann, Tara Conkling, Camille B. Concepcion, Vincent Slabe, Sharon Poessel

Using surrogate insects in acid bioassays for development of new controls for Varroa destructor (Arachnida: Varroidae)

Resistance to traditional synthetic compounds by Varroa destructor Anderson and Trueman and shortcomings of the organic acid class of acaracides commonly used in varroa management requires continual development of new controls. V. destructor, however, are difficult to obtain for use in control bioassays because they are obligate parasites that cannot be easily reared outside of a honey bee colony.
Authors
Julia Vieira, Casey L. Johnson, Elizabeth M. Varkonyi, Howard Ginsberg, Kassie Picard, Mattew Kiesewetter, Steven R. Alm

Open removal models with temporary emigration and population dynamics to inform invasive animal management

Removal sampling data are the primary source of monitoring information for many populations (e.g., invasive species, fisheries). Population dynamics, temporary emigration, and imperfect detection are common sources of variation in monitoring data and are key parameters for informing management. We developed two open robust-design removal models for simultaneously modeling population dynamics, temp
Authors
Bradley Udell, Julien Martin, Christina Romagosa, J. Hardin Waddle, Fred Johnson, Bryan Falk, Amy A. Yackel Adams, Sarah Funck, Jennifer Ketterlin Eckles, Eric Suarez, Frank Mazzotti

Genomics-informed delineation of conservation units in a desert amphibian

Delineating conservation units (CUs, e.g., evolutionarily significant units, ESUs, and management units, MUs) is critical to the recovery of declining species because CUs inform both listing status and management actions. Genomic data have strengths and limitations in informing CU delineation and related management questions in natural systems. We illustrate the value of using genomic data in comb
Authors
Brenna R. Forester, Melanie Murphy, Chad Mellison, Jeffrey Petersen, David Pilliod, Rachel Van Horne, Jim Harvey, W. Chris Funk

Bet-hedging and best-bet strategies shape seed dormancy

Seed dormancy (i.e. delayed germination even when conditions are favourable) is a key plant characteristic that occurs among many species worldwide. But, what selective pressures led to seed dormancy? A recent study provides a major analysis of the factors driving this trait at the global scale (Zhang et al., 2022). Using c. 12 000 species and 10 million records across the globe, they conclude tha
Authors
Juli G. Pausas, Byron B Lamont, Jon Keeley, William J. Bond

Temporal coherence patterns of prairie pothole wetlands indicate the importance of landscape linkages and wetland heterogeneity in maintaining biodiversity

Wetland ecosystems are diverse, productive habitats that are essential reservoirs of biodiversity. Not only are they home to numerous wetland-specialist species, but they also provide food, water, and shelter that support terrestrial wildlife populations. However, like observed patterns of biodiversity loss, wetland habitats have experienced widespread loss and degradation. In order to conserve an
Authors
Kyle McLean, David M. Mushet, Jon N. Sweetman

FY22 Technical Report: Evaluation of fish passage for assessment of invasive carp deterrents at locks in the upper Mississippi River

FY22 Technical Report for the project, "Evaluation of fish passage for assessment of invasive carp deterrents at locks in the Upper Mississippi River." This document describes specific methods, highlights, and results that show how progress towards meeting objectives in a timely manner.
Authors
Andrea K. Fritts, Joshua Abner, Mark W. Fritts, James T. Lamer, Mark Cornish

Can non-invasive methods replace radiocollar-based winter counts in a 50-year wolf study? Lessons learned from a three-winter trial

Context: Monitoring low-density, elusive predators such as grey wolves (Canis lupus) has often been undertaken via live-capture and radio-collaring. Recent advances in non-invasive methods suggest live-captures may not be necessary for adequate monitoring. Further, non-invasive methods are considered best practice when possible.Aims: I evaluated whether a suite of non-invasive methods could replac
Authors
Shannon Barber-Meyer