Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 41778
A climate-mediated shift in the estuarine habitat mosaic limits prey availability and reduces nursery quality for juvenile salmon
The estuarine habitat mosaic supports the reproduction, growth, and survival of resident and migratory fish species by providing a diverse portfolio of unique habitats with varying physical and biological features. Global climate change is expected to result in increasing temperatures, rising sea levels, and changes in riverine hydrology, which will have profound effects on the extent and composit
Authors
Melanie J. Davis, Isa Woo, Christopher S. Ellings, Sayre Hodgson, David Beauchamp, Glynnis Nakai, Susan E. W. De La Cruz
Average kinship within bighorn sheep populations is associated with connectivity, augmentation, and bottlenecks
Understanding the influence of population attributes on genetic diversity is important to advancement of biological conservation. Because bighorn sheep (Ovis canadensis) populations vary in size and management history, the species provides a unique opportunity to observe the response of average pairwise kinship, inversely related to genetic diversity, to a spectrum of natural and management influe
Authors
Elizabeth P Flesch, Tabitha Graves, Jennifer Thomson, Kelly M. Proffitt, Robert A. Garrott
Influence of offshore oil and gas structures on seascape ecological connectivity
Offshore platforms, subsea pipelines, wells and related fixed structures supporting the oil and gas (O&G) industry are prevalent in oceans across the globe, with many approaching the end of their operational life and requiring decommissioning. Although structures can possess high ecological diversity and productivity, information on how they interact with broader ecological processes remains uncle
Authors
Dianne L McLean, Luciana C. Ferreira, Jessica A Benthuysen, Karen J. Miller, Marie-Lise Schlappy, Matthew J. Ajemian, Oliver Berry, Silvana N. R. Birchenough, Todd Bond, Fabio Boschetti, Ann S Bull, Jeremy T Claisse, Scott A Condie, Pierpaolo Consoli, Joop W. P. Coolen, Michael Elliott, Irene S Fortune, Ashley M Fowler, Bronwyn M Gillanders, Hugo B Harrison, Kristen Hart, Lea-Anne Henry, Chad L Hewitt, Natalie Hicks, Karlo Hock, Kieran Hyder, Milton S. Love, Peter I Macreadie, Robert J. Miller, William A Montevecchi, Mary M Nishimoto, Henry M. Page, David M Paterson, Charitha B Pattiaratchi, Gretta T Pecl, Joanne S Porter, David B. Reeves, Cynthia Riginos, Sally Rouse, Debbie J. F. Russell, Craig D. H. Sherman, Jonas Teilmann, Victoria L. G. Todd, Eric A. Treml, David H. Williamson, Michele Thums
Coupling validation effort with in situ bioacoustic data improves estimating relative activity and occupancy for multiple species with cross-species misclassifications
The increasing complexity and pace of ecological change requires natural resource managers to consider entire species assemblages. Acoustic recording units (ARUs) require minimal cost and effort to deploy and inform relative activity, or encounter rates, for multiple species simultaneously. ARU-based surveys require post-processing of the recordings via software algorithms that assign a species la
Authors
Christian Stratton, Kathryn M. Irvine, Katharine M. Banner, Wilson J. Wright, Cori Lausen, Jason Rae
Atmospheric river storm flooding influences tidal marsh elevation building processes
Disturbances are a key component of ecological processes in coastal ecosystems. Investigating factors that affect tidal marsh accretion and elevation change is important, largely due to accelerating sea-level rise and the ecological and economic value of wetlands. Sediment accumulation rates, elevation change, and flooding were examined at five marshes along a riverine-tidal gradient in the northe
Authors
Karen M. Thorne, Scott Jones, Chase M. Freeman, Kevin J. Buffington, Christopher N. Janousek, Glenn R. Guntenspergen
Salmonella enterica serovar Typhimurium from wild birds in the United States represent distinct lineages defined by bird type
Salmonella enterica serovar Typhimurium is typically considered a host generalist; however, certain isolates are associated with specific hosts and show genetic features of host adaptation. Here, we sequenced 131 S. Typhimurium isolates from wild birds collected in 30 U.S. states during 1978-2019. We found that isolates from broad taxonomic host groups including passerine birds, water birds (Aequo
Authors
Yezhi Fu, Nkuchia M. M’ikanatha, Jeffrey M. Lorch, David S. Blehert, Brenda M. Berlowski-Zier, Chris A. Whitehouse, Shaoting Li, Xiangyu Deng, Jared C. Smith, Nikki W. Shariat, Erin M. Nawrocki, Edward G. Dudley
Precision of headwater stream permanence estimates from a monthly water balance model in the Pacific Northwest, USA
Stream permanence classifications (i.e., perennial, intermittent, ephemeral) are a primary consideration to determine stream regulatory status in the United States (U.S.) and are an important indicator of environmental conditions and biodiversity. However, at present, no models or products adequately describe surface water presence for regulatory determinations. We modified the Thornthwaite monthl
Authors
Konrad Hafen, Kyle W. Blasch, Paul E. Gessler, Roy Sando, Alan H. Rea
Complex life-cycles in trophically transmitted helminths: Do the benefits of increased growth and transmission outweigh generalism and complexity costs?
Why do so many parasitic worms have complex life-cycles? A complex life-cycle has at least two hypothesized costs: (i) worms with longer life-cycles, i.e. more successive hosts, must be generalists at the species level, which might reduce lifetime survival or growth, and (ii) each required host transition adds to the risk that a worm will fail to complete its life-cycle. Comparing hundreds of trop
Authors
Daniel P. Benesh, James C Chubb, Kevin D. Lafferty, Geoff A Parker
Risk assessment of chanchita Cichlasoma dimerus (Heckel, 1840), a newly identified non-native cichlid fish in Florida
The risk of a newly discovered non-native fish species in Florida (USA): Cichlasoma dimerus ([Heckel, 1840]; Family: Cichlidae) is assessed. Its tolerance to cold temperatures was experimentally evaluated and information on its biology and ecology was synthesized. In the cold-temperature tolerance experiment, temperature was lowered from 24 °C by increments of 1 °C per hour, mimicking a typical co
Authors
Mary Brown, Robert H. Robins, Pam Schofield
Keeping an eye on water quality from the sky
You can learn a lot about rivers, lakes, estuaries, and oceans by looking down at them from the sky. Scientists use a technique called remote sensing to measure the amount of light or heat energy reflected and emitted from the Earth. Sensors can be on satellites or mounted on airplanes, helicopters, or drones. Scientists use this information to map the quality of water in the San Francisco Bay-Del
Authors
Francine H. Mejia, Christian E. Torgersen, Cédric G Fichot
Are little brown bats (Myotis lucifugus) impacted by dietary exposure to microcystin?
The cyanobacterium, Microcystis aeruginosa, can produce the hepatotoxin microcystin. When toxic M. aeruginosa overwinters in the sediments of lakes, it may be ingested by aquatic insects and bioaccumulate in nymphs of Hexagenia mayflies. When volant Hexagenia emerge from lakes to reproduce, they provide an abundant, albeit temporary, food source for many terrestrial organisms including bats. Littl
Authors
Devon N. Jones, Gregory L. Boyer, Julia S. Lankton, Megan Woller-Skar, Amy L. Russell
Stochastic agent-based model for predicting turbine-scale raptor movements during updraft-subsidized directional flights
Rapid expansion of wind energy development across the world has highlighted the need to better understand turbine-caused avian mortality. The risk to golden eagles (Aquila chrysaetos) is of particular concern due to their small population size and conservation status. Golden eagles subsidize their flight in part by soaring in orographic updrafts, which can place them in conflict with wind turbines
Authors
Rimple Sandhu, Charles Tripp, Eliot Quon, Regis Thedin, Michael Lawson, David Brandes, Chris Farmer, Tricia A. Miller, Caroline Draxl, Paula Doubrawa, Lindy Williams, Adam E. Duerr, Melissa A. Braham, Todd E. Katzner