Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 41778
Bioaccumulation of perfluoroalkyl substances in a Lake Ontario food web
Per- and polyfluoroalkyl substances (PFAS) are a group of synthetic chemicals detected throughout the environment. To better understand the distribution of PFAS in an aquatic system (the Laurentian Great Lakes), stable isotope enrichment (δ13C and δ15N), fatty acid (FA) profiles, and PFAS were measured in various species from the Lake Ontario (LO) aquatic food web. Sampled organisms included top p
Authors
Junda Ren, Adam Point, Sadjad Fakouri Baygi, Sujan Fernando, Philip K. Hopke, Thomas M. Holsen, Brian F. Lantry, Brian C. Weidel, Bernard S. Crimmins
Microbial source tracking and evaluation of best management practices for restoring degraded beaches of Lake Michigan
Attempts to mitigate shoreline microbial contamination require a thorough understanding of pollutant sources, which often requires multiple years of data collection (e.g., point/nonpoint) and the interacting factors that influence water quality. Because restoration efforts can alter shoreline or beach morphology, revisiting source inputs is often necessary. Microbial source tracking (MST) using so
Authors
Meredith B. Nevers, Paul M. Buszka, Muruleedhara Byappanahalli, Travis Cole, Steven R. Corsi, P. Ryan Jackson, Julie L. Kinzelman, Cindy H Nakatsu, Mantha S. Phanikumar
Results of the collaborative Lake Ontario bloater restoration stocking and assessment, 2012–2020
Bloater, Coregonus hoyi, are deepwater planktivores native to the Laurentian Great Lakes and Lake Nipigon. Interpretations of commercial fishery time series suggest they were common in Lake Ontario through the early 1900s but by the 1950s were no longer captured by commercial fishers. Annual bottom trawl surveys that began in 1978 and sampled extensively across putative bloater habitat only yielde
Authors
Brian C. Weidel, Amanda Susanne Ackiss, Marc Chalupnicki, Michael Connerton, Steve Davis, John M. Dettmers, Timothy Drew, Aaron T. Fisk, Roger Gordon, S. Dale Hanson, Jeremy Holden, Mark E. Holey, James H. Johnson, Timothy B. Johnson, Colin Lake, Brian F. Lantry, Kevin K. Loftus, Gregg E. Mackey, James E. McKenna, Michael J. Millard, Scott P. Minihkeim, Brian O'Malley, Andrew C. Todd, Steven Lapan, Adam Rupnik
Depth drives growth dynamics of dreissenid mussels in Lake Ontario
Understanding dreissenid mussel population dynamics and their impacts on lake ecosystems requires quantifying individual growth across a range of habitats. Most dreissenid mussel growth rates have been estimated in nutrient rich or nearshore environments, but mussels have continued to expand into deep, cold, low-nutrient habitats of the Great Lakes. We measured annual quagga mussel (Dreissena rost
Authors
Ashley Elgin, Paul Glyshaw, Brian C. Weidel
Evaluation of post-stocking dispersal and mortality of juvenile lake trout Salvelinus namaycush in Lake Ontario using acoustic telemetry
Wild reproduction by stocked lake trout Salvelinus namaycush in Lake Ontario has yet to produce a self-sustaining population, requiring a reliance on stocking. Once released, age-1 juvenile lake trout are not typically surveyed until age-2, creating a gap in knowledge of fine-scale post-release behaviors. A method to track fine-scale movements and estimate mortality of juvenile lake trout could co
Authors
Alexander J. Gatch, Stacy L. Furgal, Dimitry Gorsky, J. Ellen Marsden, Zy F. Biesinger, Brian F. Lantry
An evaluation of fish spawning on degraded and remnant reefs in Saginaw Bay, Lake Huron
Saginaw Bay is a shallow, nutrient-rich embayment in Lake Huron that historically had a complex network of natural rocky reefs. These reef habitats were used as spawning and nursery areas for a variety of fish species, but decades of land-use related sedimentation caused many of these reefs to be degraded. Our study objectives were to analyze abiotic and biotic conditions on degraded and remnant r
Authors
N Kalejs, Mitchell T. Zischke, J. Beugly, P. Collingsworth, Edward F. Roseman, R. Douglas Hunter, D. Fielder, T. Hook
Estimating detection and occupancy of secretive marsh bird species in low and high saline marshes in southwestern Louisiana using automated recording units
Secretive marsh birds (SMBs) are important indicator species of coastal wetlands but are difficult to detect and monitor. In coastal Louisiana, an important stronghold for these species, climate and hydrological models predict that freshwater and intermediate marshes will expand in the next 50 years, while brackish marshes will shrink. We used a multi-species Bayesian hierarchical occupancy model
Authors
Hardin Waddle, Landon R. Jones, Phillip L. Vasseur, Clint W. Jeske
A comparison of eDNA and visual survey methods for detection of longnose darter Percina nasuta in Missouri
The longnose darter Percina nasuta is a rare and cryptic fish that recently disappeared from much of its historic range. We developed and used an environmental DNA (eDNA) assay for longnose darter paired with visual surveys to better determine the species’ range and compare detection probability between sampling approaches in an occupancy modeling framework. We detected longnose darter eDNA furthe
Authors
Jacob Thomas Westhoff, Leah K. Berkman, Katy E. Klymus, Nathan Thompson, Cathy A. Richter
Comparative virulence of spring viremia of carp virus (SVCV) genotypes in two koi varieties
Spring viremia of carp virus (SVCV), is a lethal freshwater pathogen of cyprinid fish, and Cyprinus carpio koi is a primary host species. The virus was initially described in the 1960s after outbreaks occurred in Europe, but a global expansion of SVCV has been ongoing since the late 1990s. Genetic typing of SVCV isolates separates them into 4 genotypes that are correlated with geographic origin: I
Authors
Eveline J. Emmenegger, Emma K. Bueren, Peng Jia, Noble Hendrix, Hong Liu
Pedigree analysis and estimates of effective breeding size characterize sea lamprey reproductive biology
The sea lamprey (Petromyzon marinus) is an invasive species in the Great Lakes and the focus of a large control and assessment program. Current assessment methods provide information on the census size of spawning adult sea lamprey in a small number of streams, but information characterizing reproductive success of spawning adults is rarely available. We used RAD-capture sequencing to genotype sin
Authors
Ellen M. Weise, Kim T. Scribner, Jean V. Adams, Olivia Boeberitz, Aaron K. Jubar, Gale Bravener, Nicholas S. Johnson, John D. Robinson
Climate change and plant regeneration from seeds in Mediterranean regions of the Northern Hemisphere
Mediterranean regions are biodiversity hotspots whose landscapes are characterized by evergreen sclerophyllous vegetation, mild-wet winters, and hot-dry summers. In the Northern Hemisphere, they occur in the Mediterranean Basin and California regions. In these areas, whose habitats are heavily shaped by centuries of anthropic activities, the main effects of climate change include a decrease in pre
Authors
Efsio Mattana, Angelino Carta, Eduardo Fernández-Pascual, Jon Keeley, Hugh W. Pritchard