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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41764

PopEquus: a predictive modeling tool to support management decisions for free-roaming horse populations

Feral horse (Equus caballus) population management is a challenging problem around the world because populations often exhibit density-independent growth, can exert negative ecological effects on ecosystems, and require great cost to be managed. However, strong value-based connections between people and horses cause contention around management decisions. To help make informed decisions, natural r
Authors
Brian Patrick Folt, Kathryn A. Schoenecker, L. Stefan Ekernas, David R. Edmunds, Mark T. Hannon

Molecular data validate historical and contemporary distributions of Pleurobema riddellii (Bivalvia: Unionidae) and help guide conservation and recovery efforts

Accurate taxonomic and distributional information are arguably the most critical components of conservation status assessments but can be greatly affected by misidentifications. The Louisiana pigtoe Pleurobema riddellii is a freshwater mussel proposed as threatened under the US Endangered Species Act. The species belongs to the tribe Pleurobemini, which includes multiple taxa that are inherently c
Authors
Nathan Johnson, Caitlin Beaver, Alexander H. Kiser, Matthew A. Duplessis, Matthew D. Wagner, Robert J. Ellwanger, Clinton R. Robertson, Sean D. Kinney, Beau B. Gregory, Steve Wolverton, Charles R. Randklev, Paul D. Hartfield, James D. Williams, Chase H. Smith

An inconvenient trend: Decadal decline in ground height of swamps in Southern Illinois

An understanding of the long-term trends of ground height and sedimentation in a landscape context can provide a framework to better understand the impacts of agricultural development on floodplain processes. This study examined long-term changes in ground height using surface elevation tables (SETs) and sediment deposition measurements in the Cache River floodplains of Southern Illinois including
Authors
Beth Middleton

Hepatotoxic response of perfluorooctane sulfonamide (PFOSA) in early life stage zebrafish (Danio rerio) is greater than perfluorooctane sulfonate (PFOS)

Perfluorooctane sulfonamide (PFOSA), a typical perfluorooctane sulfonate precursor (PreFOS), has been detected in the aquatic environment globally. However, the effects of PFOSA at levels measured in the environment have not been well characterized in aquatic organisms. In this study, we evaluated the transcriptional, biochemical, histopathological, and morphological effects of PFOSA to characteri
Authors
Rongrong Xuan, Xiaojian Qiu, Jiazhen Wang, Shai Liu, Jason Tyler Magnuson, Bentuo Xu, Wenhui Qui, Chunmiao Zheng

A comparison of summer, fall and winter estimates of monarch population size before and after milkweed eradication from crop fields in North America

Measures of the area occupied by overwintering monarchs in México since the mid-1990s show a decline. Summer surveys of monarchs, however, do not show a similar decline. This discrepancy has led to the proposition that summer monarch numbers are actually stable and that increasing mortality during migration has led to declining overwintering numbers. A competing hypothesis is that this discrepancy
Authors
John M. Pleasants, Wayne E. Thogmartin, Karen Oberhauser, Orley (Chip) Taylor, Carl Stenoien

Identifying sources of antibiotic resistance genes in the environment using the microbial Find, Inform, and Test framework

Introduction: Antimicrobial resistance (AMR) is an increasing public health concern for humans, animals, and the environment. However, the contributions of spatially distributed sources of AMR in the environment are not well defined.Methods: To identify the sources of environmental AMR, the novel microbial Find, Inform, and Test (FIT) model was applied to a panel of five antibiotic resistance-asso
Authors
Corinne Wiesner-Friedman, Rachelle Elaine Beattie, Jill R. Stewart, Krassimira R. Hristova, Marc L. Serre

Large-scale variation in lakebed properties interpreted from single-beam sonar in two Laurentian Great Lakes

Acoustic seabed classification (ASC) is an important method for understanding landscape-level physical and biological patterns in the aquatic environment. Bottom habitats in the Laurentian Great Lakes are poorly mapped to date, and will require a variety of contributors and data sources to complete. We repurposed a long-term split-beam echosounder dataset gathered for purposes of fisheries assessm
Authors
Samuel Pecoraro, Peter C. Esselman, Timothy P. O'Brien, Steve A. Farha, David Warner

Mercury isotope values in shoreline spiders reveal transfer of aquatic mercury sources to terrestrial food webs

The transfer of aquatic contaminants, including mercury (Hg), to terrestrial food webs is an often-overlooked exposure pathway to terrestrial animals. While research has implemented the use of shoreline spiders to assess aquatic to terrestrial Hg transfer, it is unclear whether Hg sources, estimated from isotope ratios, can be successfully resolved to inform site assessments and remedy effectivene
Authors
Sarah E. Janssen, Christopher James Kotalik, Collin Eagles-Smith, Gale B. Beaubien, Joel C. Hoffman, Greg Peterson, Marc A. Mills, David Walters

Converting CRP grasslands to cropland, grazing land, or hayland: Effects on breeding bird abundances in the northern Great Plains of the United States

Recent declines of grassland bird populations in North America are linked to habitat loss and fragmentation associated with agricultural practices. One tool used to conserve soil, water and wildlife habitat on agricultural fields is the U.S. Department of Agriculture’s Conservation Reserve Program (CRP), the largest agricultural conservation program in the United States. Managers and conservationi
Authors
Lawrence Igl, Deborah A. Buhl, Max Post van der Burg, Douglas H. Johnson

Native amphibian toxin reduces invasive crayfish feeding with potential benefits to stream biodiversity

BackgroundBiodiversity is generally reduced when non-native species invade an ecosystem. Invasive crayfish, Procambarus clarkii, populate California freshwater streams, and in the Santa Monica Mountains (Los Angeles, USA), their introduction has led to trophic cascades due to omnivorous feeding behavior and a rapid rate of population growth. The native California newt, Taricha torosa, possesses a
Authors
Gary M. Bucciarelli, Sierra J. Smith, Justin J. Choe, Phoebe D. Shin, Robert N. Fisher, Lee B. Kats

So, you want to build a decision-support tool? Assessing successes, barriers, and lessons learned for tool design and development

The purpose of this study is to increase understanding of how the U.S. Geological Survey (USGS) is developing decision-support tools (DSTs) by documenting successes and barriers across all levels of USGS scientific tool creation and outreach. These findings will help streamline future tool design and development processes. We provide a synthesis of lessons learned and best practices across a spect
Authors
Amanda D. Stoltz, Amanda E. Cravens, Nicole M. Herman-Mercer, Chung Yi Hou

Design and utility of automatous, floating bait delivery platform for applying fish management baits

Using manufactured baits to attract fish to passive gear is common practice in fisheries management. The most common method is using hoop nets baited with soybean cakes or waste cheese to increase captures of multiple catfish species; however, these techniques are limited to how often bait is added, the type of bait, gear compatibility, and oversaturation of bait during soak time. The U.S. Geologi
Authors
James J. Wamboldt