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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

Gut microbiome composition associates with corticosteroid treatment, morbidity, and senescence in Chinook salmon (Oncorhynchus tshawytscha)

Pacific salmon experience prolonged elevation in corticosteroid hormones during important life history events including migration, reproduction, and senescence. These periods of elevated corticosteroids correspond with changes to immunity and energy metabolism; therefore, fish may be particularly vulnerable to mortality at these times. Recent studies found that stress-induced cortisol release asso
Authors
Claire E. Couch, William T. Neal, Crystal L. Herron, Michael L. Kent, Carl B. Schreck, James Peterson

Coherence among Oregon Coast coho salmon populations highlights increasing relative importance of marine conditions for productivity

Anadromous fishes, such as Pacific salmon, spend portions of their life cycle in freshwater and marine systems, thus rendering them susceptible to a variety of natural and anthropogenic stressors. These stressors operate at different spatiotemporal scales, whereby freshwater conditions are more likely to impact single populations or subpopulations, while marine conditions are more likely to act on
Authors
Melanie J. Davis, James Anthony, Eric J. Ward, Julie Firman, Chris Lorion

An evaluation of multistate occupancy models for estimating relative abundance and population trends

Detecting spatiotemporal changes in the abundances of organisms is key to effectively conserving species. While indices of abundance have long been used, there has been a shift toward model-based estimators that account for the detection process. Popular approaches including traditional occupancy models and N-mixture models entail tradeoffs. The traditional occupancy approach requires the research
Authors
Valerie A. Steen, Adam Duarte, James Peterson

Anthropogenic subsidies influence resource use during a mange epizootic in a desert coyote population

Colonization of urban areas by synanthropic wildlife introduces novel and complex alterations to established ecological processes, including the emergence and spread of infectious diseases. Aggregation at urban resources can increase disease transfer, with wide-ranging species potentially infecting outlying populations. The garrison at the National Training Center, Fort Irwin, California, USA, was
Authors
Craig D. Reddell, Gary W. Roemer, David K. Delaney, Talesha Karish, James W. Cain

Diet composition and resource overlap of sympatric native and introduced salmonids across neighboring streams during a peak discharge event

Species assemblages composed of non-native and native fishes are found in freshwater systems throughout the world, and interactions such as interspecific competition that may negatively affect native species are expected when non-native species are present. In the Smith River watershed, Montana, rainbow trout were introduced by 1930. Native mountain whitefish and non-native rainbow trout have pres
Authors
Tanner L. Cox, Michael J. Lance, Lindsey K. Albertson, Michelle A. Briggs, Adeline J. Dutton, Alexander V. Zale

Juvenile life history diversity is associated with lifetime individual heterogeneity in a migratory fish

Differences in the life history pathways (LHPs) of juvenile animals are often associated with differences in demographic rates in later life stages. For migratory animals, different LHPs often result in animals from the same population occupying distinct habitats subjected to different environmental drivers. Understanding how demographic rates differ among animals expressing different LHPs may rev
Authors
Mark H. Sorel, Andrew R. Murdoch, Richard W. Zabel, Jeffrey C. Jorgensen, Cory M. Kamphaus, Sarah J. Converse

Density effects on native and non-native trout survival in streams

Environmental stressors associated with a changing climate and non-native fish, individually, represent significant threats to native fish conservation. These threats can exacerbate risks to native fishes when conditions interact at the trailing edge of a population's distribution. We collected capture–mark–recapture data for Rio Grande cutthroat trout (RGCT, Oncorhynchus clarkii virginalis) at th
Authors
Brock M. Huntsman, Lauren Flynn, Colleen A. Caldwell, Abigail Lynch, Fitsum Abadi

Wind-energy development alters pronghorn migration at multiple scales

Migration is a critical behavioral strategy necessary for population persistence and ecosystem functioning, but migration routes have been increasingly disrupted by anthropogenic activities, including energy development. Wind energy is the world's fastest growing source of electricity and represents an important alternative to hydrocarbon extraction, but its effects on migratory species beyond bir
Authors
Megan C. Milligan, Aaron N. Johnston, Jeffery L. Beck, Kaitlyn L. Taylor, Embere Hall, Lee Knox, Teal Cufaude, Cody F. Wallace, Geneva W. Chong, Matthew Kauffman

A comprehensive multi-state conditional occupancy model for evaluating interactions of non-native and native species

A major challenge in ecology is disentangling interactions of non-native, potentially invasive species on native species. Conditional two-species occupancy models examine the effects of dominant species (e.g., non-native) on subordinate species (e.g., native) while considering the possibility that occupancy of one species may affect occupancy and/ or detection of the other. Although conditional tw
Authors
Patti J. Wohner, Paul D. Scheerer, Michael H. Meeuwig, James Peterson

Multi-scale effects of land cover, weather, and fire on Columbian sharp-tailed grouse

Columbian sharp-tailed grouse (Tympanuchus phasianellus columbianus) are endemic to grassland and shrub-steppe ecosystems of western North America, yet their distribution has contracted to <10% of their historical range. Primary threats to Columbian sharp-tailed grouse include loss of native habitat and conversion to agriculture, reductions in habitat once provided by the Conservation Reserve Prog
Authors
Bryan S. Stevens, Courtney J. Conway, Jeffrey M. Knetter, Shane B. Roberts, Patrick Donnelly

Aerial application of organic pellets eliminates Lake Trout recruitment from a primary spawning reef in Yellowstone Lake

Invasive Lake Trout Salvelinus namaycush in the Yellowstone Lake ecosystem have been gillnetted since 1995 to suppress the population and allow for recovery of native Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri. Although gillnetting is effective (Lake Trout population growth rate λ ≤ 0.6 during 2012–2022), the effort only targets free-swimming, age-2 and older Lake Trout. We develope
Authors
Todd M. Koel, Philip D. Doepke, Drew J. MacDonald, Nathan A. Thomas, Cody W. Vender, Hayley C. Glassic, Alex S. Poole, Christopher S. Guy, Alexander V. Zale

Differential shortstopping behaviour in Whooping Cranes: Habitat or social learning?

Many migratory bird species have begun shifting their wintering grounds closer to their breeding grounds, shortening their yearly migration distance through a behavior called shortstopping. While multiple studies have investigated possible drivers, it remains unclear why only some populations adopt this behavior.We studied the differential occurrence of shortstopping in two populations of Whooping
Authors
Philipp Mendgen, Sarah J. Converse, Aaron T. Pearse, Claire S. Teitelbaum, Thomas Mueller