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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

The mysterious case of the missing razor clams

Oceans are changing and these changes are affecting animals that live there. Animals respond differently to changes in water temperature, food availability, or contaminants. Those responses can be seen in their genes. Gene transcription is a tool that allows scientists to see the response of an animal’s genes to its environment. We used gene transcription to compare two populations of Pacific razo
Authors
Heather Coletti, Lizabeth Bowen, Brenda Ballachey, Tammy L Wilson, Shannon C. Waters, Michael Booz, Katrina Counihan, Tuula E. Hollmen, Benjamin Pister

Pleistocene–Holocene vicariance, not Anthropocene landscape change, explains the genetic structure of American black bear (Ursus americanus) populations in the American Southwest and northern Mexico

The phylogeography of the American black bear (Ursus americanus) is characterized by isolation into glacial refugia, followed by population expansion and genetic admixture. Anthropogenic activities, including overharvest, habitat loss, and transportation infrastructure, have also influenced their landscape genetic structure. We describe the genetic structure of the American black bear in the Ameri
Authors
Matthew J. Gould, James W. Cain, Todd C. Atwood, Larisa E. Harding, Heather E. Johnson, Dave P. Onorato, Frederic S. Winslow, Gary W. Roemer

Congruence among multiple indices of habitat preference for species facing human-induced rapid environmental change: A case study using the Brewer's sparrow

Accurate evaluations of habitat preference are key to understanding optimal conditions for wildlife survival and reproduction. Habitat selection, however, usually is evaluated using a single index of preference, and congruence among multiple, relevant indices of preference is examined rarely.We assessed the concordance between patterns of habitat preference using three different indices of breedin
Authors
Max Carlin, Anna D. Chalfoun

Fish carcass deposition to suppress invasive lake trout through hypoxia causes limited, non-target effects on benthic invertebrates in Yellowstone Lake

Invasive species can have negative effects on native biodiversity and ecosystem function, and suppression is often required to minimize the effects. However, management actions to suppress invasive species may cause negative, unintended effects on non-target taxa. Across the United States, lake trout (Salvelinus namaycush) are invasive in many freshwater ecosystems, reducing native fish abundance
Authors
Michelle A. Briggs, Lindsey K. Albertson, Dominique R. Lujan, Lusha M. Tronstad, Hayley C. Glassic, Christopher S. Guy, Todd M. Koel

Industrial energy development decouples ungulate migration from the green wave

The ability to freely move across the landscape to track the emergence of nutritious spring green-up (termed ‘green-wave surfing’) is key to the foraging strategy of migratory ungulates. Across the vast landscapes traversed by many migratory herds, habitats are being altered by development with unknown consequences for surfing. Using a unique long-term tracking dataset, we found that when energy d
Authors
Ellen O. Aikens, Teal B. Wyckoff, Hall Sawyer, Matthew Kauffman

Simple statistical models can be sufficient for testing hypotheses with population time series data

Time-series data offer wide-ranging opportunities to test hypotheses about the physical and biological factors that influence species abundances. Although sophisticated models have been developed and applied to analyze abundance time series, they require information about species detectability that is often unavailable. We propose that in many cases, simpler models are adequate for testing hypothe
Authors
Seth J. Wenger, Edward S. Stowe, Keith B. Gido, Mary Freeman, Yoichiro Kanno, Nathan R. Franssen, Julian Olden, N. LeRoy Poff, Annika W. Walters, Phillip M. Bumpers, Meryl C. Mims, Mevin B. Hooten, Xinyi Lu

Wildlife migrations highlight importance of both private lands and protected areas in the Greater Yellowstone Ecosystem

Formally protected areas are an important component of wildlife conservation, but face limitations in their effectiveness for migratory species. Improved stewardship of working lands around protected areas is one solution for conservation planning, but private working lands are vulnerable to development. In the Greater Yellowstone Ecosystem (GYE), ungulates such as elk (Cervus canadensis) use both
Authors
Laura C. Gigliottia, Wenjing Xu, Gabriel Zuckerman, M. Paul Atwood, Eric K. Cole, Alyson Courtemanch, Sarah Dewey, Justin A. Gude, Patrick Hnilicka, Matthew Kauffman, Kailin Kroetz, Arthur Lawson, Bryan Leonard, Daniel MacNulty, Eric Maichak, Douglas McWhirter, Tony W. Mong, Kelly Proffitt, Brandon Scurlock, Daniel R. Stahler, Arthur D. Middleton

Scat as a source of DNA for population monitoring

Sampling fecal droppings (scat) to genetically identify individual animals is an established method for monitoring mammal populations and could be highly useful for monitoring reptile populations. Whereas existing protocols for obtaining DNA from reptile scat focus on analyses of whole, fresh scat deposited during animal handling, the collection of scat naturally deposited by reptiles in situ, as
Authors
Jeffrey A. Manning, Taylor Edwards, John Clemons, Daniel J. Leavitt, Caren S. Goldberg, Melanie Culver

The socioecology of fear: A critical geographical consideration of human-wolf-livestock conflict

Animal fear can be an important driver of ecological community structure: predators affect prey not only through predation, but by inducing changes in behavior and distribution—a phenomenon evocatively called the “ecology of fear.” The return of wolves to the western United States is a notable instance of such dynamics, yet plays out in a complex socio-ecological system where efforts to mitigate i
Authors
Robert M. Anderson, Susan Charnley, Kathleen Epstein, Kaitlyn M. Gaynor, Jeff Vance Martin, Michael (Alex) C Mcinturff

Diversity in spawning habitat use among Great Lakes Cisco populations

Cisco (Coregonus artedi) once dominated fish communities in the Laurentian Great Lakes. Restoring the abundance and distribution of this species has emerged as a management priority, yet our understanding of Cisco spawning habitat use is insufficient to characterise habitat needs for these populations and assess whether availability of suitable spawning habitat could be a constraint to recovery. W
Authors
Matthew R. Paufve, Suresh Sethi, Brian C. Weidel, Brian F. Lantry, Daniel Yule, Lars G. Rudstam, Jory L. Jonas, Eric K. Berglund, Michael J. Connerton, Dimitry Gorsky, Matthew Herbert, Jason Smith

A life cycle model for evaluating estuary residency and restoration potential in Chinook salmon

Understanding the spatial and temporal habitat use of a population is a necessary step for recovery planning. For Chinook salmon (Oncorhynchus tshawytscha), variation in their migration and habitat use complicate predicting how restoring habitats could impact total recruitment. To evaluate how juvenile life history variation affects a population’s response to potential restoration, we developed a
Authors
Emily K. Chen, Nicholas A. Som, John Deibner-Hanson, David G. Anderson, Mark J. Henderson

Suppression of invasive fish in the west: Synthesis and suggestions for improvement

Reservoirs are ubiquitous features on the landscape of the western United States. Although reservoirs provide numerous benefits (e.g., irrigation, flood control, hydropower, recreational use), these systems are often a concern from an ecological perspective. Reservoirs support fisheries primarily composed of nonindigenous sport fishes that may become invasive and negatively influence recipient eco
Authors
Zachary B. Klein, Michael Quist, Christopher S. Guy