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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

Hybridization decreases native cutthroat trout reproductive fitness

Examining natural selection in wild populations is challenging, but crucial to understanding many ecological and evolutionary processes. Additionally, in hybridizing populations, natural selection may be an important determinant of the eventual outcome of hybridization. We characterized several components of relative fitness in hybridizing populations of Yellowstone cutthroat trout and rainbow tro
Authors
William C. Rosenthal, John M. Fennell, Elizabeth G. Mandeville, Jason C. Burckhardt, Annika W. Walters, Catherine E. Wagner

Progression of infection and detection of Pseudoloma neurophilia in zebrafish Danio rerio Hamilton by PCR and histology

Pseudoloma neurophilia is a critical threat to the zebrafish (Danio rerio) model, as it is the most common infectious agent found in research facilities. In this study, our objectives were two-fold: (1) compare the application of diagnostic tools for P. neurophilia and (2) track the progression of infection using PCR and histology. The first experiment showed that whole-body analysis by qPCR (WB-q
Authors
Corbin J. Schuster, Taylor Kreul, Colleen E. Al-Samarrie, James Peterson, Justin L. Sanders, Michael L. Kent

Integrating monitoring and optimization modeling to inform flow decisions for Chinook salmon smolts

Monitoring is usually among the first actions taken to help inform recovery planning for declining species, but these data are rarely used formally to inform conservation decision making. For example, Central Valley Chinook salmon were once abundant, but anthropogenic activities have led to widespread habitat loss and degradation resulting in significant population declines. Monitoring data sugges
Authors
Patti J. Wohner, Adam Duarte, John Wikert, Brad Cavallo, Steven C. Zeug, James Peterson

Endemic Guadalupe bass (Micropterus treculii) are supported by isotopically distinct resources in tributary versus mainstem river food webs

We used stable isotope analysis to investigate differences in Guadalupe bass (Micropterus treculii) resource use that might be associated with population-level variation in mainstem river versus tributary stream habitats. Guadalupe bass from mainstem sites had higher δ13C and δ15N values compared to those collected in tributaries, likely reflecting greater importance of algae as a basal resource a
Authors
Allison A. Pease, Jessica E. Pease, Preston T. Bean, Timothy B. Grabowski

Temporal segregation in spawning between native Yellowstone cutthroat trout and introduced rainbow trout

Hybridisation with introduced taxa poses a threat to native fish populations. Mechanisms of reproductive isolation can limit or prevent hybridisation between closely related species. Understanding how these mechanisms interact between the same species across geographically distinct occurrences of secondary contact, and how regional factors influence them, can inform our understanding of hybridisat
Authors
John M. Fennell, William C. Rosenthal, Catherine E. Wagner, Jason C. Burckhardt, Annika W. Walters

Population genetics reveals bidirectional fish movement across the Continental Divide via an interbasin water transfer

Interbasin water transfers are becoming an increasingly common tool to satisfy municipal and agricultural water demand, but their impacts on movement and gene flow of aquatic organisms are poorly understood. The Grand Ditch is an interbasin water transfer that diverts water from tributaries of the upper Colorado River on the west side of the Continental Divide to the upper Cache la Poudre River on
Authors
Audrey Harris, Sara J. Oyler-McCance, Jennifer A. Fike, Matthew P Fairchild, Christopher M Kennedy, Harry J Crockett, Dana L. Winkelman, Yoichiro Kanno

Intrabrood variation in nestling mass among three sagebrush-associated songbirds

The young of some altricial bird species hatch asynchronously, which can lead to considerable size differences among siblings. Nestling traits such as body mass, moreover, can carry over and influence post-fledging survival. Despite the potential importance of nestling mass for reproductive outcomes, however, variation in nestling mass and relationships with brood size has been described and quant
Authors
Ashleigh M. Rhea, Jason D. Carlisle, Anna D. Chalfoun

Reproductive indices and observations of mass ovarian follicular atresia in hatchery-origin pallid sturgeon

The Pallid Sturgeon (Scaphirhynchus albus) Conservation Propagation and Stocking Program began stocking in the Missouri River above Fort Peck Reservoir in 1998 with 1997-year-class pallid sturgeon. Within the 1997-year class, all hatchery-origin pallid sturgeon females that reached reproductive maturation by 2016 underwent mass ovarian follicular atresia. Using combined historical and contemporary
Authors
Tanner L. Cox, Christopher S. Guy, Luke M. Holmquist, Molly A. H. Webb

Bayesian inverse reinforcement learning for collective animal movement

Agent-based methods allow for defining simple rules that generate complex group behaviors. The governing rules of such models are typically set a priori, and parameters are tuned from observed behavior trajectories. Instead of making simplifying assumptions across all anticipated scenarios, inverse reinforcement learning provides inference on the short-term (local) rules governing long-term behavi
Authors
Toryn L. J. Schafer, Christopher K. Wikle, Mevin Hooten

Water storage decisions and consumptive use may constrain ecosystem management under severe sustained drought

Drought has impacted the Colorado River basin for the past 20 years and is predicted to continue. In response, decisions about how much water should be stored in large reservoirs and how much water can be consumptively used will be necessary. These decisions have the potential to limit riverine ecosystem management options through the effect water-supply decisions have on reservoir elevations. We
Authors
Lindsey Ann Bruckerhoff, Kevin Wheeler, Kimberly L. Dibble, B.A. Mihalevich, B.T. Nielson, J. Wang, Charles Yackulic, J.C. Schmidt

Experience preferences and place attachment of Minnesota wildlife management area hunters

Hunters in the United States are motivated to obtain and benefit from diverse experiences or experience preferences. Using a mail survey conducted during the 2015–2016 hunting season, we examined goal-oriented, introspective, and leadership experiences among hunters on Minnesota Department of Natural Resources’ Wildlife Management Area (WMAs). We used k-means cluster analysis to identify six clust
Authors
Kelsie LaSharr, David C. Fulton, L. Cornicelli

The importance of lake emergent aquatic vegetation for estimating Arctic-boreal methane emissions

Areas of lakes that support emergent aquatic vegetation emit disproportionately more methane than open water but are under-represented in upscaled estimates of lake greenhouse gas emissions. These shallow areas are typically less than ∼1.5 m deep and can be detected with synthetic aperture radar (SAR). To assess the importance of lake emergent vegetation (LEV) zones to landscape-scale methane emis
Authors
Ethan D. Kyzivat, Laurence C. Smith, Fenix Garcia-Tigreros, Chang Huang, Chao Wang, Theodore Langhorst, Jessica V. Fayne, Merritt E. Harlan, Yuta Ishitsuka, Dongmei Feng, Wayana Dolan, Lincoln H. Pitcher, Kimberly Wickland, Mark Dornblaser, Robert G. Striegl, Tamlin M. Pavelsky, David E. Butman, Colin J. Gleason