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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

Elevated winter stream temperatures below wastewater treatment plants shift reproductive development of female Johnny Darter Etheostoma nigrum: A field and histologic approach

River water temperatures are increasing globally, particularly in urban systems. In winter, wastewater treatment plant (WWTP) effluent inputs are of particular concern because they increase water temperatures from near freezing to ~7–15 °C. Recent laboratory studies suggest that warm overwinter temperatures impact the reproductive timing of some fishes. To evaluate winter water temperature’s influ
Authors
Catherine M. Adams, Dana L. Winkelman, Paula A. Schaffer, Daniel L. Villeneuve, Jenna E. Cavallin, Michael Ellman, Kelvin Santana Rodriguez, Ryan M. Fitzpatrick

Rotenone induces mortality of invasive Lake Trout and Rainbow Trout embryos

ObjectiveNonnative fish, including Lake Trout Salvelinus namaycush and Rainbow Trout Oncorhynchus mykiss, are actively invading lakes and streams and threatening Cutthroat Trout O. clarkii and other native species in the western United States. Programs have been implemented to suppress invasive trout using netting, trapping, electrofishing, angling, or other traditional capture methods. Because th
Authors
Alex S. Poole, Todd M. Koel, Alexander V. Zale, Molly A. H. Webb

A practical guide to understanding and validating complex models using data simulations

Biologists routinely fit novel and complex statistical models to push the limits of our understanding. Examples include, but are not limited to, flexible Bayesian approaches (e.g. BUGS, stan), frequentist and likelihood-based approaches (e.g. packages lme4) and machine learning methods.These software and programs afford the user greater control and flexibility in tailoring complex hierarchical mod
Authors
Graziella Vittoria Direnzo, Ephraim Hanks, David A. W. Miller

Individual characteristics and abiotic factors influence out-migration dynamics of juvenile bull trout

Fragmentation of rivers through anthropogenic modifications poses an imminent threat to the persistence of migratory fish, necessitating direct actions such as trap-and-haul programs to restore and conserve the migratory life-history component in populations of partially migratory species such as bull trout Salvelinus confluentus. We used a PIT-tag system to assess how biological and abiotic facto
Authors
Madeline C. Lewis, Christopher S. Guy, Eric W. Oldenburg, Thomas E. McMahon

Combination of acoustic telemetry and side-scan sonar advances suppression efforts for invasive lake trout in a submontane lake

Expansion of an invasive Lake Trout Salvelinus namaycush population in Swan Lake, Montana, threatens a core area population of Bull Trout S. confluentus. Given the recent development of novel suppression methods, such as use of carcass analog pellets to cause high mortality of embryos, there was a need to quantify spawning season aggregation sites, site use, and spawning habitat for Lake Trout in
Authors
Michael J. Siemiantkowski, Christopher S. Guy, Todd M. Koel, Lusha M. Tronstad, Carter R. Fredenberg, Leo R. Rosenthal

Factors affecting post-challenge survival of Flavobacterium psychrophilum in susceptible rainbow trout from the literature

Infectious bacterial pathogens are a concern for aquaculture as estimates suggest that billions of US dollars are lost annually in aquaculture due to disease. One of the most prevalent salmonid pathogens is the bacterium Flavobacterium psychrophilum that causes bacterial coldwater disease. We reviewed the published F. psychrophilum literature and conducted a Bayesian analysis to examine large-scal
Authors
Brian W. Avila, Kathryn P. Huyvaert, Dana L. Winkelman, Eric R. Fetherman

Drones and bathymetry show the importance of optimal water depth for nest placement within breeding colonies of Western and Clark’s grebes

Habitat selection involves a series of decisions that are arguably the most important decisions that animals make and these decisions occur at multiple hierarchical spatial scales. Colonial-nesting birds face a unique challenge when selecting a nest site because each bird’s choices are severely constrained by other birds within their breeding colony. Individuals must seek out optimum nesting locat
Authors
Deo A. Lachman, Courtney J. Conway, Kerri T. Vierling, Ty Matthews, Diane Evans Mack

A size-based stock assessment model for invasive blue catfish in a Chesapeake Bay sub-estuary during 2001–2016

Stock assessment modeling provides a means to estimate the population dynamics of invasive fishes and may do so despite data limitations. Blue catfish (Ictalurus furcatus) were introduced to the Chesapeake Bay watershed to support recreational fisheries but also consume species of conservation need and economic importance. To assess management tradeoffs, managers need to understand the current sta
Authors
Corbin David Hilling, Yan Jiao, Mary C. Fabrizio, Paul L. Angermeier, Aaron J. Bunch, Donald J. Orth

Small-scale variation in trap placement affects arthropod capture rates on sticky traps in riparian woodlands

Arthropods are important prey for many avian taxa, particularly during the breeding season. Many studies have used sticky traps to estimate relative abundance of arthropods as avian prey, but we know little about the potential biases associated with sticky traps. We evaluated the effect of small-scale variation in trap placement on the biomass of arthropods caught on sticky traps in six riparian w
Authors
Dominic D. LaRoche, Chris Kirkpatrick, Courtney J. Conway

Mismatch between temperature and discharge disrupts spawning cues in a fluvial specialist, blue sucker Cycleptus elongatus

Seasonal movements cued by environmental variables are a critical component of riverine fish life history. Life-history events for species such as blue sucker Cycleptus elongatus are likely cued by discharge and temperature and may be disrupted if those life-history events and environmental regimes are mismatched. However, this effect may be dependent upon the habitat occupied when environmental c
Authors
Matthew Ross Acre, Timothy B. Grabowski, Daniel J. Leavitt, Nathan G. Smith, Allison A. Pease, Preston T. Bean, Dakus Geeslin

The development of genetic sex identification markers and evidence of a male heterogametic sex determination system in Red Shiner

The Red Shiner Cyprinella lutrensis is of increasing management interest as an invasive species that negatively impacts many native fishes throughout North America. Trojan sex chromosome (TSC)-carrying individuals could theoretically control invasive fish populations by skewing the sex ratio to 100% male. The efficacy of TSC-based control programs requires an understanding of a population's sex de
Authors
Chad N. Teal, D. Katharine Coykendall, Matthew R. Campbell, Thomas A. Delomas, Daniel L. Eardley, John A. Erwin, Daniel J. Schill, Javan Mathias Bauder, Scott A. Bonar, Melanie Culver

Geomorphology shapes relationships between animal communities and ecosystem function in large rivers

Understanding how the Earth's surface (i.e. ‘nature's stage') influences connections between biodiversity and ecosystem function (BEF) is a central objective in ecology. Despite recent calls to examine these connections at multiple trophic levels and at more complex and realistic scales, little is known about how landscape structure shapes BEF relationships among animal communities in nature. We c
Authors
Eric A. Scholl, Wyatt F. Cross, Christopher S. Guy