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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42177

Multi-species attributes as the condition for adaptive sampling of rare species using two-stage sequential sampling with an auxiliary variable

Assessing populations of rare species is challenging because of the large effort required to locate patches of occupied habitat and achieve precise estimates of density and abundance. The presence of a rare species has been shown to be correlated with presence or abundance of more common species. Thus, ecological community richness or abundance can be used to inform sampling of rare...
Authors
Bardia Panahbehagh, David R. Smith, M.M. Salehi, D.J. Hornbach, D.J. Brown

Evolution of natural history information in the 21st century – developing an integrated framework for biological and geographical data

Threats to marine and estuarine species operate over many spatial scales, from nutrient enrichment at the watershed/estuarine scale to invasive species and climate change at regional and global scales. To help address research questions across these scales, we provide here a standardized framework for a biogeographical information system containing queriable biological data that allows...
Authors
Deborah A. Reusser, Lee

Behavior and movement of formerly landlocked juvenile coho salmon after release into the free-flowing Cowlitz River, Washington

Formerly landlocked Coho Salmon (Oncorhynchus kisutch) juveniles (age 2) were monitored following release into the free-flowing Cowlitz River to determine if they remained in the river or resumed seaward migration. Juvenile Coho Salmon were tagged with a radio transmitter (30 fish) or Floy tag (1050 fish) and their behavior was monitored in the lower Cowlitz River. We found that 97% of...
Authors
Tobias J. Kock, Julie A. Henning, Theresa Liedtke, Ida M. Royer, Brian K. Ekstrom, Dennis W. Rondorf

Increasing thiamine concentrations in lake trout eggs from Lakes Huron and Michigan coincide with low alewife abundance

Lake trout Salvelinus namaycush in the Laurentian Great Lakes suffer from thiamine deficiency as a result of adult lake trout consuming prey containing thiaminase, a thiamine-degrading enzyme. Sufficiently low egg thiamine concentrations result in direct mortality of or sublethal effects on newly hatched lake trout fry. To determine the prevalence and severity of low thiamine in lake...
Authors
Stephen Riley, Jacques Rinchard, Dale C. Honeyfield, Allison N. Evans, Linda J. Begnoche

Carryover effects associated with winter location affect fitness, social status, and population dynamics in a long-distance migrant

We used observations of individually marked female black brant geese (Branta bernicla nigricans; brant) at three wintering lagoons on the Pacific coast of Baja California—Laguna San Ignacio (LSI), Laguna Ojo de Liebre (LOL), and Bahía San Quintín (BSQ)—and the Tutakoke River breeding colony in Alaska to assess hypotheses about carryover effects on breeding and distribution of individuals...
Authors
James S. Sedinger, Jason L. Schamber, David Ward, Christopher A. Nicolai, Bruce P. Conant

Gopherus agassizii (desert tortoise). Burrow collapse

In the deserts of the southwestern U.S., burrows are utilized by the Desert Tortoise to escape environmental extremes (reviewed by Ernst and Lovich 2009. Turtles of the United States and Canada. 2nd ed. Johns Hopkins Univ. Press, Baltimore, Maryland. 827 pp.). However, the potential for mortality through burrow collapse and entrapment is poorly documented. Nicholson and Humphreys (1981...
Authors
Caleb L. Loughran, Joshua R. Ennen, Jeffrey E. Lovich

Infectious diseases in Yellowstone’s canid community

Each summer Yellowstone Wolf Project staff visit den sites to monitor the success of wolf reproduction and pup rearing behavior. For the purposes of wolf monitoring, Yellowstone National Park (YNP) is divided into two study areas, the northern range and the interior, each distinguished by their ecological and physiographical differences. The 1,000 square kilometer northern range...
Authors
Emily S. Almberg, Paul C. Cross, L. David Mech, Doug W. Smith, Jennifer W. Sheldon, Robert L. Crabtree

Variation in spring migration routes and breeding distribution of northern pintails Anas acuta that winter in Japan

In North America, spring migration routes and breeding distribution of northern pintails Anas acuta vary because some individuals opportunistically nest at mid-latitudes in years when ephemeral prairie wetlands are available, whereas others regularly nest in arctic and sub-arctic regions where wetland abundance is more constant. Less was known about migration routes and breeding...
Authors
Jerry W. Hupp, Noriyuki M. Yamaguchi, Paul L. Flint, John M. Pearce, Ken-ichi Tokita, Tetsuo Shimada, Andrew M. Ramey, Sergei Kharitonov, Hiroyoshi Higuchi

Growth, morphology, and developmental instability of rainbow trout, Yellowstone cutthroat trout, and four hybrid generations

Hybridization of cutthroat trout Oncorhynchus clarkii with nonindigenous rainbow trout O. mykiss contributes to the decline of cutthroat trout subspecies throughout their native range. Introgression by rainbow trout can swamp the gene pools of cutthroat trout populations, especially if there is little selection against hybrids. We used rainbow trout, Yellowstone cutthroat trout O...
Authors
Carl Ostberg, Jeffrey J. Duda, J.H. Graham, S. Zhang, K. P. Haywood, B. M. Miller, T.L. Lerud

Gopherus agassizii (Desert Tortoise). Non-native seed dispersal

Sahara Mustard (Brassica tournefortii) is a non-native, highly invasive weed species of southwestern U.S. deserts. Sahara Mustard is a hardy species, which flourishes under many conditions including drought and in both disturbed and undisturbed habitats (West and Nabhan 2002. In B. Tellman [ed.], Invasive Plants: Their Occurrence and Possible Impact on the Central Gulf Coast of Sonora...
Authors
Joshua R. Ennen, Caleb L. Loughran, Jeffrey E. Lovich

Factors governing risk of cougar attacks on humans

Since the 1980s wildlife managers in the United States and Canada have expressed increasing concern about the physical threat posed by cougars (Puma concolor) to humans. We developed a conceptual framework and analyzed 386 human– cougar encounters (29 fatal attacks, 171 instances of nonfatal contact, and 186 close-threatening encounters) to provide information relevant to public safety...
Authors
David J. Mattson, Kenneth A. Logan, Linda L. Sweanor

Biogeochemical evolution of a landfill leachate plume, Norman, Oklahoma

Leachate from municipal landfills can create groundwater contaminant plumes that may last for decades to centuries. The fate of reactive contaminants in leachate-affected aquifers depends on the sustainability of biogeochemical processes affecting contaminant transport. Temporal variations in the configuration of redox zones downgradient from the Norman Landfill were studied for more...
Authors
Isabelle M. Cozzarelli, J.K. Böhlke, Jason R. Masoner, George N. Breit, Michelle M. Lorah, Michele L.W. Tuttle, Jeanne B. Jaeschke
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