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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41858

U.S. Geological Survey science strategy to address chronic wasting disease and cervid health in 2024–2028

Chronic wasting disease (CWD), a neurological disease similar to scrapie in goats and sheep, has been spreading since the 1960s throughout cervid populations in the United States. It is currently detected in 30 States and now also extends to Canada, Korea, and Scandinavia. CWD is a fatal disease caused by an infectious abnormally folded prion protein. Population-level effects of CWD on localized s
Authors
Jason Ferrante, Jonathan Cook, Paul Cross, M. Camille Hopkins

Trophic transfer of fipronil residues to black-footed ferrets: Implications for ferret safety, flea control, and plague mitigation

Sylvatic plague, caused by the flea-borne bacterium Yersinia pestis, is an invasive disease in North America that causes reductions of native fauna and transforms ecosystems. Fipronil baits have shown promise in reducing flea loads on prairie dogs Cynomys spp. for plague mitigation. Many species depend on prairie dogs and their ecological influences, including the black-footed ferret Mustela nigri
Authors
Tyler N. Tretten, David A. Eads, John P. Hughes, Gregory P. Dooley, Dean E. Biggins

Cryospheric sciences at the U.S. Geological Survey

IntroductionThe cryosphere is the collective parts of the Earth where water is in its frozen state and includes snow, glaciers, ice sheets, ice shelves, freshwater ice, sea ice, and permafrost. The cryosphere is a climate indicator and climate regulator. Surface cryosphere features, such as glaciers, snow, and sea ice, store freshwater and make the surface of the Earth bright white, which affects
Authors
Caitlyn Florentine, Erich Peitzsch, Miriam C. Jones, Theodore B. Barnhart, Thomas M. Cronin

High genetic diversity, low population genetic structure, strong natal philopatry, and longevity revealed in the Black Swift (Cypseloides niger borealis)

Genetic diversity is a critical cornerstone of biodiversity and is a central goal in management and conservation biology. Such diversity has implications for survivability, adaptability, and resiliency of a species. This study aimed to determine levels of genetic diversity and population genetic structure in the Northern Black Swift (Cypseloides niger borealis). This species nests across western N
Authors
Carolyn Gunn, Kim Potter, Jennifer A. Fike, Sara J. Oyler-McCance

Food-web dynamics of a floodplain mosaic overshadow the effects of engineered logjams for Pacific salmon and steelhead

Food webs vary in space and time. The structure and spatial arrangement of food webs are theorized to mediate temporal dynamics of energy flow, but empirical corroboration in intermediate-scale landscapes is scarce. River-floodplain landscapes encompass a mosaic of aquatic habitat patches and food webs, supporting a variety of aquatic consumers of conservation concern. How the structure and produc
Authors
James C. Paris, Colden V. Baxter, James R Bellmore, Joseph R. Benjamin

Adaptive capacities of inland fisheries facing anthropogenic pressures

Inland fisheries face multiple, intensifying threats (i.e., proximate human pressures causing degraded ecological attributes) from land development, climate change, resource extraction, and competing demands for water resources. Planning for resiliency amidst these pressures requires understanding the factors that influence an inland fishery’s capacity to adapt to system changes under multiple thr
Authors
Gretchen L. Stokes, Samuel J. Smidt, Emily L. Tucker, Matteo Cleary, Simon Funge-Smith, John Valbo‐Jørgensen, Benjamin S. Lowe, Abigail Lynch

Outmigration behavior and survival of juvenile Chinook salmon (Oncorhynchus tshawytscha) in response to deep drawdown of the Lookout Point Project, Middle Fork Willamette River, Oregon

An acoustic telemetry study was conducted during August 2023–February 2024 to evaluate outmigration behavior and survival of juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Middle Fork Willamette River, Oregon, during an experimental operation that was designed to facilitate downstream passage through two reservoirs and two dams. The experimental operation consisted of lowering the water
Authors
Dalton J. Hance, Tobias J. Kock, Jake R. Kelley, Amy C. Hansen, Russell W. Perry, Scott D Fielding

Distribution, abundance, breeding activities, and habitat use of the Least Bell's Vireo at Marine Corps Base Camp Pendleton, California—2023 annual report

Executive SummaryThe purpose of this report is to provide the Marine Corps with an annual summary of abundance, breeding activity, demography, and habitat use of endangered Least Bell’s Vireos (Vireo bellii pusillus) at Marine Corps Base Camp Pendleton, California (MCBCP or Base). Surveys for the Least Bell's Vireo were completed at MCBCP between April 11 and July 20, 2023. Core survey areas and a
Authors
Suellen Lynn, Barbara E. Kus

New technology for an ancient fish: A lamprey life cycle modeling tool with an R Shiny application

Lampreys (Petromyzontiformes) are an ancient group of fishes with complex life histories. We created a life cycle model that includes an R Shiny interactive web application interface to simulate abundance by life stage. This will allow scientists and managers to connect available demographic information in a framework that can be applied to questions regarding lamprey biology and conservation. We
Authors
Dylan Gerald-Everett Gomes, Joseph R. Benjamin, Benjamin J. Clemens, Ralph Lampman, Jason B. Dunham

Predicted occurrence and abundance habitat suitability of invasive plants in the contiguous United States: Updates for the INHABIT web tool.

Invasive plant species have substantial negative ecological and economic impacts. Geographic information on the potential and actual distributions of invasive plants is critical for their effective management. For many regions, numerous sources of predictive geographic information exist for invasive plants, often in the form of outputs from species distribution models (SDMs). The creation of a rep
Authors
Catherine S. Jarnevich, Peder Engelstad, Demetra A. Williams, Keana S. Shadwell, Cameron J. Reimer, Grace Henderson, Janet S. Prevéy, Ian Pearse

Modeling the responses of blue carbon fluxes in Mississippi River Deltaic Plain brackish marshes to climate change induced hydrologic conditions

Carbon fluxes in tidal brackish marshes play a critical role in determining coastal wetland carbon sequestration and storage, thus affecting carbon crediting of coastal wetland restoration. In this study, a process-driven wetland biogeochemistry model, Wetland Carbon Assessment Tool DeNitrification-DeComposition was applied to nine brackish marsh sites in Mississippi River (MR) Deltaic Plain to ex
Authors
Hongqing Wang, Ken Krauss, Zhaohua Dai, Gregory Noe, Carl C. Trettin

Visual interpretation of high-resolution aerial imagery: A tool for land managers

Remotely sensed imagery from various collection platforms (e.g., satellites, crewed and uncrewed aircraft) are used by biologists and other conservation personnel to support management activities ranging from monitoring invasive species to assessing land cover and vegetation characteristics. Although remote sensing–based vegetation indices and models have been developed and used for some managemen
Authors
Brian Tangen, Rebecca L. Esser, Benjamin A. Walker
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