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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41610

All tidal wetlands are blue carbon ecosystems

Managing coastal wetlands is one of the most promising activities to reduce atmospheric greenhouse gases, and it also contributes to meeting the United Nations Sustainable Development Goals. One of the options is through blue carbon projects, in which mangroves, saltmarshes, and seagrass are managed to increase carbon sequestration and reduce greenhouse gas emissions. However, other tidal wetlands
Authors
Maria Fernanda Adame, Jeffrey Kelleway, Ken Krauss, Catherine E. Lovelock, Janine B. Adams, Stacey M. Trevathan-Tackett, Gregory B. Noe, Luke Jeffrey, Mike Ronan, Maria Zann, Paul E. Carnell, Naima Iram, Damien T. Maher, Daniel Murdiyarso, Sigit D. Sasmito, Da B. Tran, Paul Dargusch, J. Boone Kauffman, Laura S. Brophy

Multiple stressors mediate the effects of warming on leaf decomposition in a large regulated river

Predicting how increasing temperatures interact with other global change drivers to influence the structure and dynamics of Earth's ecosystems is a primary challenge in ecology. Our study made use of multiple simultaneous “natural experiments” to examine how rapid warming, declining nutrients, invasive consumers, and riparian invasive species management interact to influence leaf decomposition in
Authors
Eric Arthur Scholl, Kyle R. Hanus, Tyler Gardner, Theodore Kennedy

Analysis of mitochondrial DNA sequence data demonstrates that monophyly of myotis occultus is complicated by greater sampling of myotis lucifugus

The validity of Myotis occultus as a species unique from Myotis lucifugus has been a source of debate. Most recently, many authorities treat M. occultus as a distinct species, at least in part because a previous study showed that M. occultus and M. l. carissima (the subspecies that occurs in closest geographic proximity to M. occultus) form separate monophyletic clades based on sequences of two mi
Authors
Jeffrey M. Lorch, Antoinette J. Piaggio, Daniel R. Taylor

Vulnerability to sea-level rise varies among estuaries and habitat types: Lessons learned from a network of surface elevation tables in Puget Sound

Estuarine systems that provide valuable ecosystem services to society and important foraging and rearing habitat for fish and wildlife species continue to undergo degradation. In Puget Sound, WA, as much as 70–80% of historic estuarine habitat has been lost to anthropogenic development, and continued losses are expected through the end of the twenty-first century due to rising sea levels. To evalu
Authors
Melanie J. Davis, Katrina L. Poppe, John M. Rybczyk, Eric E. Grossman, Isa Woo, Joshua W. Chamberlin, Michelle Totman, Todd Zackey, Frank Leonetti, Suzanne Shull, Susan E. W. De La Cruz

Shift in piscivory by salmonids following invasion of a minnow in an oligotrophic reservoir

Predation can play an important role in structuring ecological communities, and predator–prey dynamics can be altered following the introduction of new species. An unauthorized introduction of redside shiner (Richardsonius balteatus) into reservoirs in the Upper Skagit River, Washington, USA created concern that a consequent shift in predator–prey dynamics in the reservoirs could reduce recruitmen
Authors
Rachelle Carina Johnson, Marshal Hoy, Karl D. Stenberg, Jonathan H Mclean, Benjamin Lorenz Jensen, Tessa Julianne Code, Carl Ostberg, David Beauchamp

Electrocution (avian) case definition for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents.The intent of a case definition is to provide scientifically based criteria for determining (a) if an individu
Authors
Julia S. Lankton, Laura Bourque, Bridget B. Baker, Jane Parmley

Ophidiomycosis (snake fungal disease) case definition for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents.The intent of a case definition is to provide scientifically based criteria for determining (a) if an individu
Authors
Julia S. Lankton, Brian Stevens, Lenny Shirose, Christina Davy

Avian botulism case definition for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents.The intent of a case definition is to provide scientifically based criteria for determining (a) if an individu
Authors
Julia S. Lankton, Brian Stevens

[Disease/condition] case definition [template] for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents. The intent of a case definition is to provide scientifically based criteria for determining (a) if an individ
Authors
Kimberli J.G. Miller, E. Jane Parmley, Anne Ballmann, Jennifer Buckner, Megan Jones, Julia S. Lankton, Marnie Zimmer, Emily Lankau

Case definitions for wildlife diseases

Welcome to the first manual of “Case Definitions for Wildlife Diseases,” a “living” electronic publication. The plan is to add and update this manual’s case definitions periodically as warranted; thus, this manual will never be completed, and readers should download the latest versions of specific chapters (that is, definitions) when available. Constructive suggestions from readers are welcome and
Authors
Kimberli J.G. Miller, E. Jane Parmley, Anne Ballmann, Jennifer Buckner, Megan Jones, Julia S. Lankton, Marnie Zimmer

Yosemite toad (Anaxyrus canorus) transcriptome reveals interplay between speciation genes and adaptive introgression

Genomes are heterogeneous during the early stages of speciation, with small ‘islands’ of DNA appearing to reflect strong adaptive differences, surrounded by vast seas of relative homogeneity. As species diverge, secondary contact zones between them can act as an interface and selectively filter through advantageous alleles of hybrid origin. Such introgression is another important adaptive process,
Authors
Paul A. Maier, A. G. Vandergast, Andrew J. Bohonak

Annotated bibliography of scientific research relevant to oil and gas reclamation best management practices in the western United States, published from 1969 through 2020

Integrating recent scientific knowledge into management decisions supports effective natural resource management and can lead to better resource outcomes. However, finding and accessing scientific knowledge can be time consuming and costly. To assist in this process, the U.S. Geological Survey has created a series of annotated bibliographies on topics of management concern for lands in the western
Authors
Rebecca K. Mann, Molly L. McCormick, Seth M. Munson, Hillary F. Cooper, Lee C. Bryant, Jared K. Swenson, Laura A. Johnston, Savannah L. Wilson, Michael C. Duniway