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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 171816

Divergent gene expression profiles in Alaskan sea otters: An indicator of chronic domoic acid exposure?

An opportunistic investigation into ecosystem instability in Kachemak Bay (KBay), Alaska, has led us to investigate exposure to toxic algae in sea otters. We used gene expression to explore the physiological health of sea otters sampled in KBay in May 2019. We found altered levels of gene transcripts in comparison with reference sea otters from clinically normal, oil-exposed, and nutritionally cha
Authors
Lizabeth Bowen, Susan Knowles, Kathi Lefebvre, Michelle St Martin, Michael Murray, Kimberly A. Kloecker, Daniel Monson, Ben Weitzman, Brenda Ballachey, Heather Coletti, Shannon C. Waters, C Cummings

Reference genome of the California glossy snake, Arizona elegans occidentalis: A declining California Species of Special Concern

The glossy snake (Arizona elegans) is a polytypic species broadly distributed across southwestern North America. The species occupies habitats ranging from California’s coastal chaparral to the shortgrass prairies of Texas and southeastern Nebraska, to the extensive arid scrublands of central México. Three subspecies are currently recognized in California, one of which is afforded state-level prot
Authors
Dustin A. Wood, Jonathan Q. Richmond, Merly Escalona, Mohan P. A. Marimuthu, Oanh Nguyen, Samuel Sacco, Eric Beraut, Michael F. Westphal, Robert N. Fisher, A. G. Vandergast, Erin Toffelmier, Ian J Wang, H. Bradley Shaffer

RNA-seq reveals potential gene biomarkers in fathead minnows (Pimephales promelas) for exposure to treated wastewater effluent

Discharged wastewater treatment plant (WWTP) effluent greatly contributes to the generation of complex mixtures of contaminants of emerging concern (CECs) in aquatic environments which often contain neuropharmaceuticals and other emerging contaminants that may impact neurological function. However, there is a paucity of knowledge on the neurological impacts of these exposures to aquatic organisms.
Authors
Peter Schumann, E. Meade, H. Zhi, G. H. LeFevre, Dana W. Kolpin, Shannon M. Meppelink, Luke R. Iwanowicz, Rachael F. Lane, A. Schmoldt, O. Mueller, R. D. Klaper

Multi-decadal simulation of marsh topography evolution under sea level rise and episodic sediment loads

Coastal marsh within Mediterranean climate zones is exposed to episodic watershed runoff and sediment loads that occur during storm events. Simulating future marsh accretion under sea level rise calls for attention to: (a) physical processes acting over the time scale of storm events and (b) biophysical processes acting over time scales longer than storm events. Using the upper Newport Bay in Sout
Authors
M W Brand, Kevin Buffington, J B Rogers, Karen M. Thorne, E D Stein, B F Sanders

Diverse tsunamigenesis triggered by the Hunga Tonga-Hunga Ha’apai eruption

On the evening of 15 January 2022, the Hunga Tonga-Hunga Ha’apai volcano1 unleashed a violent underwater eruption, blanketing the surrounding land masses in ash and debris. The eruption generated tsunamis observed around the world. An event of this type last occurred in 1883 during the eruption of Krakatau, and thus we have the first observations of a tsunami from a large emergent volcanic eruptio
Authors
Patrick Lynett, Maile McCann, Zili Zhou, Willington Renteria, Jose Borrero, Dougal Greer, 'Ofa Fa'anunu, Cyprien Bosserelle, Bruce E. Jaffe, SeanPaul La Selle, Andrew C. Ritchie, Alexander G. Snyder, Brandon Nasr, Jaqueline Bott, Nicholas A Graehl, Costas Synolakis, Behzad Ebrahimi, Ezgi Cinar

Numbers and presence of guarding dogs affect wolf and leopard predation on livestock in northeastern Iran

Livestock predation can pose socio-economic impacts on rural livelihoods and is the main cause of retaliatory killings of carnivores in many countries. Therefore, appropriate interventions to reduce livestock predation, lower conflict and promote coexistence are needed. Livestock guarding dogs have been traditionally used to reduce predation, yet details regarding the use of dogs, especially the n
Authors
Mahmood Soofi, Mobin Soufi, Andy Royle, Matthias Waltert, Igor Khorozyan

New projections of 21st century climate and hydrology for Alaska and Hawaiʻi

In the United States, high-resolution, century-long, hydroclimate projection datasets have been developed for water resources planning, focusing on the contiguous United States (CONUS) domain. However, there are few statewide hydroclimate projection datasets available for Alaska and Hawaiʻi. The limited information on hydroclimatic change motivates developing hydrologic scenarios from 1950 to 2099
Authors
Naoki Mizukami, Andrew J. Newman, Jeremy Littell, Thomas W. Giambelluca, Andrew W. Wood, Ethan D. Gutmann, Joseph J. Hamman, Diana R. Gergel, Bart Nijssen, Martyn . Clark, Jeffrey R. Arnold

Root hemiparasitic plants are associated with more even communities across North America

Root hemiparasitic plants both compete with and extract resources from host plants. By reducing the abundance of dominant plants and releasing subordinates from competitive exclusion, they can have an outsized impact on plant communities. Most research on the ecological role of hemiparasites is manipulative and focuses on a small number of hemiparasitic taxa. Here, we ask whether patterns in natur
Authors
Jasna Hodzic, Ian Pearse, Evelyn M. Beaury, Jeff Corbin, Jonathan D. Bakker

Temperature variations in the northern Gulf of Alaska across synoptic to century-long time scales

Surface and subsurface moored buoy, ship-based, remotely sensed, and reanalysis datasets are used to investigate thermal variability of northern Gulf of Alaska (NGA) nearshore, coastal, and offshore waters over synoptic to century-long time scales. NGA sea surface temperature (SST) showed a larger positive trend of 0.22 ± 0.10 °C per decade over 1970–2021 compared to 0.10 ± 0.03 °C per decade over
Authors
Seth L. Danielson, Tyler D. Hennon, Daniel Monson, Robert M. Suryan, Rob W. Cambell, Steven J. Baird, Kristine Holderied, Thomas J. Weingartner

Trends of lesser prairie-chicken habitat extent and distribution on the Southern High Plains

The lesser prairie-chicken (Tympanuchus pallidicinctus) is a species of prairie grouse that occupies grassland ecosystems in the Southern and Central High Plains of the Great Plains. Reduced abundance and occupied ranges have led to increased conservation efforts throughout the species’ range. Habitat loss is considered the predominant cause of these declines. In the Southern High Plains of Texas
Authors
Carlos Portillo-Quintero, Blake Grisham, David A. Haukos, Clint W. Boal, Christian A. Hagen, Zhanming Wan, Mukti Subedi, Nwasinachi Menkiti

Landsat 9 geometric characteristics using underfly data

The Landsat program has a long history of providing remotely sensed data to the user community. This history is being extended with the addition of the Landsat 9 satellite, which closely mimics the Landsat 8 satellite and its instruments. These satellites contain two instruments, the Operational Land Imager (OLI) and the Thermal Infrared Sensor (TIRS). OLI is a push-broom sensor that collects visi
Authors
Michael J. Choate, Rajagopalan Rengarajan, James C. Storey, Mark Lubke

A geospatial knowledge graph prototype for national topographic mapping

Knowledge graphs are a form of database representation and handling that show the potential to better meet the challenges of data interoperability, semi-automated information reasoning, and information retrieval. Geospatial knowledge graphs (GKG) have at their core specialized forms of applied ontology that provide coherent spatial context to a domain of information including non-spatial attribute
Authors
Dalia E. Varanka
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