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Publications

For more than a century, USGS scientists have conducted research in California’s Bay-Delta region. Informing natural-resource management decisions on the region’s issues, this research has been published in thousands of documents, some highlighted below.

Filter Total Items: 308

Post-release survival of surf scoters following an oil spill: an experimental approach to evaluating rehabilitation success

Birds are often the most numerous vertebrates damaged and rehabilitated in marine oil spills; however, the efficacy of avian rehabilitation is frequently debated and rarely examined experimentally. We compared survival of three radio-marked treatment groups, oiled, rehabilitated (ORHB), un-oiled, rehabilitated (RHB), and un-oiled, non-rehabilitated (CON), in an experimental approach to examine pos
Authors
Susan E. W. De La Cruz, John Y. Takekawa, Kyle A. Spragens, Julie Yee, Richard T. Golightly, Greg Massey, Laird A. Henkel, Scott Larsen, Michael Ziccardi

Using a non-physical behavioural barrier to alter migration routing of juvenile Chinook salmon in the Sacramento–San Joaquin River Delta

Anthropogenic alterations to river systems, such as irrigation and hydroelectric development, can negatively affect fish populations by reducing survival when fish are routed through potentially dangerous locations. Non-physical barriers using behavioural stimuli are one means of guiding fish away from such locations without obstructing water flow. In the Sacramento–San Joaquin River Delta, we eva
Authors
R.W. Perry, J.G. Romine, N.S. Adams, A.R. Blake, J.R. Burau, S.V. Johnston, T.L. Liedtke

Dissolved organic matter reduces algal accumulation of methylmercury

Dissolved organic matter (DOM) significantly decreased accumulation of methylmercury (MeHg) by the diatom Cyclotella meneghiniana in laboratory experiments. Live diatom cells accumulated two to four times more MeHg than dead cells, indicating that accumulation may be partially an energy-requiring process. Methylmercury enrichment in diatoms relative to ambient water was measured by a volume concen
Authors
Allison C. Luengen, Nicholas S. Fisher, Brian A. Bergamaschi

Drivers of change in estuarine-coastal ecosystems: Discoveries from four decades of study in San Francisco Bay

Poised at the interface of rivers, ocean, atmosphere and dense human settlement, estuaries are driven by a large array of natural and anthropogenic forces. San Francisco Bay exemplifies the fast-paced change occurring in many of the world's estuaries, bays and inland seas in response to these diverse forces. We use observations from this particularly well-studied estuary to illustrate responses to
Authors
J. E. Cloern, A.D. Jassby

Survival and migration route probabilities of juvenile Chinook salmon in the Sacramento-San Joaquin River Delta during the winter of 2009-10

Juvenile Chinook salmon (Oncorhynchus tshawytscha) emigrating from natal tributaries of the Sacramento River may use a number of migration routes to negotiate the Sacramento-San Joaquin River Delta (hereafter, "the Delta"), each of which may influence their probability of surviving. We applied a mark-recapture model to data from acoustically tagged juvenile late-fall Chinook salmon that migrated t
Authors
Russell W. Perry, Jason G. Romine, Scott J. Brewer, Peter E. LaCivita, William N. Brostoff, Eric D. Chapman

2011 Georgiana Slough non-physical barrier performance evaluation project report

The Sacramento River and its tributaries support populations of anadromous fish species including winter-run, spring-run, fall-run, and late fall–run Chinook salmon (Oncorhynchus tshawytscha); and steelhead (O. mykiss). Several of these species are listed as threatened or endangered under the California Endangered Species Act (CESA), federal Endangered Species Act (ESA), or both. These species spa
Authors
Ryan R. Reeves, Jacob McQuirk, Khalid Ameri, Russell W. Perry, Jason G. Romine, Theresa L. Liedtke, Jon R. Burau, Aaron R. Blake, Chris Fitzer, Natalie Smith, Steve Pagliughi, Sam Johnston, Kevin Kumagai, Kenneth Cash

Atlas of nonindigenous marine and estuarine species in the North Pacific

Executive Summary Marine and estuarine nonindigenous species (NIS) are found across the world’s oceans, and designing effective management strategies to mitigate this economic, ecological and human health threat requires a basic understanding of the existing invasion patterns at regional to global scales. However, to date, syntheses at ocean basin scales have essentially been nonexistent. To fill
Authors
Lee, Deborah A. Reusser

Relative value of managed wetlands and tidal marshlands for wintering northern pintails

Northern pintail Anas acuta (hereafter, pintail) populations have declined substantially throughout the western US since the 1970s, largely as a result of converting wetlands to cropland. Managed wetlands have been developed throughout the San Francisco Bay estuaries to provide wildlife habitat, particularly for waterfowl. Many of these areas were historically tidal baylands and plans are underway
Authors
Peter S. Coates, Michael L. Casazza, Brian J. Halstead, Joseph P. Fleskes

Regional economic impacts of current and proposed management alternatives for Don Edwards National Wildlife Refuge

The National Wildlife Refuge System Improvement Act of 1997 requires all units of the National Wildlife Refuge System to be managed under a Comprehensive Conservation Plan. The Comprehensive Conservation Plan must describe the desired future conditions of a Refuge and provide long-range guidance and management direction to achieve refuge purposes. The Don Edwards San Francisco Bay National Wildlif
Authors
Leslie Richardson, Chris Huber, Lynne Koontz

Hunting influences the diel patterns in habitat selection by northern pintails Anas acuta

Northern pintail Anas acuta (hereafter pintail) populations wintering within Suisun Marsh, a large estuarine managed wetland near San Francisco Bay, California,USA, have declined markedly over the last four decades. The reasons for this decline are unclear. Information on how hunting and other factors influence the selection of vegetation types and sanctuaries would be beneficial to manage pintail
Authors
Michael L. Casazza, Peter S. Coates, Michael R. Miller, Cory T. Overton, Daniel R. Yparraguirre

Life histories, salinity zones, and sublethal contributions of contaminants to pelagic fish declines illustrated with a case study of San Francisco Estuary, California, USA

Human effects on estuaries are often associated with major decreases in abundance of aquatic species. However, remediation priorities are difficult to identify when declines result from multiple stressors with interacting sublethal effects. The San Francisco Estuary offers a useful case study of the potential role of contaminants in declines of organisms because the waters of its delta chronically
Authors
Marjorie L. Brooks, Erica Fleishman, Larry R. Brown, Peggy W. Lehman, Inge Werner, Nathaniel Scholz, Carys Michelmore, James R. Loworn, Michael L. Johnson, Daniel Schlenk

Will inundation and salinity levels associated with projected sea level rise reduce the survival, growth, and reproductive capacity of Sarcocornia pacifica (pickleweed)?

In the San Francisco Bay Estuary, CA, USA, sea level rise (SLR) is projected to increase by 1.4 m during the next 90 years resulting in increased inundation and salt water intrusion up-estuary. Since inundation and salinity are critical factors that drive vegetation structure and composition in coastal wetlands, we asked whether inundation and salinity levels associated with SLR would reduce the s
Authors
I. Woo, John Y. Takekawa