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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41763

Contaminant studies in Oregon

No abstract available.
Authors
Charles J. Henny

Assessing the efficacy of using a parentage-based tagging survival model to evaluate two sources of mortality for juvenile Chinook salmon (Oncorhynchus tshawytscha) in Lookout Point Reservoir, Oregon

We conducted a study to assess the efficacy of using a parentage-based tagging survival model (PBT N-mixture model) to evaluate two sources of mortality for juvenile Chinook salmon (Oncorhynchus tshawytscha) in Lookout Point Reservoir, Oregon. The model was originally developed to evaluate reservoir mortality because of predation from piscivorous fish. However, recent studies have also found that
Authors
Dalton J. Hance, Tobias J. Kock, Russell W. Perry, Adam C. Pope

Invasive species control and management: The sea lamprey story

Control of invasive species is a critical component of conservation biology given the catastrophic damage that they can cause to the ecosystems they invade. This is particularly evident with sea lamprey (Petromyzon marinus) in the Laurentian Great Lakes. Native to the Atlantic Ocean, the sea lamprey's ability to osmoregulate in fresh water, its wide thermal tolerance, generalist diet, and high fec
Authors
Michael P. Wilkie, Nicholas S. Johnson, Margaret F. Docker

Linking evolutionary potential to extinction risk: Applications and future directions

Extinction-risk assessments play a major role in prioritizing conservation action at national and international levels. However, quantifying extinction risk is challenging, especially when including the full suite of adaptive responses to environmental change. In particular, evolutionary potential (EP), the capacity to evolve genetically based changes that increase fitness under changing condition
Authors
Brenna R. Forester, Erik A. Beever, Catherine Darst, Jennifer Szymanski, W. Chris Funk

USGS Telemetry Project

No abstract available.
Authors
Marybeth K. Brey, Brent C. Knights, Jessica Stanton, Sean Bailey, Travis J. Harrison, Douglas Appel, Andrea K. Fritts, James J. Duncker, P. Ryan Jackson

Perspectives on challenges and opportunities at the restoration-policy interface in the U.S.A.

As we advance into the United Nations Decade on Ecosystem Restoration, understanding the relationship between science, management, and policy is increasingly important given the paucity of research evaluating the ability of existing policy to address contemporary environmental challenges. Despite their inherent interdependence, restoration ecology as a scientific discipline, ecological restoration
Authors
Ella M. Samuel, Rachel M. Mitchell, Daniel E. Winkler

Occurrence of a reproducing wild population of Channa aurolineata (Pisces: Channidae) in the Manatee River drainage, Florida

We report on the discovery of a wild, reproducing population of Channa aurolineata (Pisces: Channidae) in west-central Florida (USA), and first documented occurrence of snakeheads in the Gulf Coast region. Channa aurolineata is a large, predatory fish of the bullseye snakehead “Marulius group” species complex from Asia. Adult and juvenile specimens were captured in June 2020 in a 1.8-hectare pond
Authors
Leo Nico, Matthew Neilson, Robert H. Robins, John M. Pfeiffer, Matthew Kail, Zachary S. Randall, Eric A. Johnson

Gaining decision-maker confidence through community consensus: Developing environmental DNA standards for data display on the USGS Nonindigenous Aquatic Species database

To advance national efforts for the detection and biosurveillance of aquatic invasive species (AIS), we employed a community consensus process to enable the incorporation of environmental DNA (eDNA) detection data into the U.S. Geological Survey’s (USGS) Nonindigenous Aquatic Species (NAS) database (https://nas.er.usgs.gov/eDNA/). Our goal was to identify minimum standards and best practices for t
Authors
Jason Ferrante, Wesley M. Daniel, Jonathan (Contractor) Adam Freedman, Katy E. Klymus, Matthew Neilson, Yale Passamaneck, Christopher B. Rees, Adam J. Sepulveda, Margaret Hunter

Juvenile green sturgeon (Acipenser medirostris) movement during autumn and winter in the lower Sacramento River, California, 2016–20

A collaborative acoustic telemetry study was conducted to describe behavior and movement patterns of juvenile green sturgeon (Acipenser medirostris) in the lower Sacramento River, California during 2016–19. For the study, juvenile green sturgeon were collected, tagged, and released in the Sacramento River between river kilometer (rkm) 467 and rkm 419 near Red Bluff, California. Telemetry monitorin
Authors
Amy C. Hansen, Robert D. Chase, Tobias J. Kock, Russell W. Perry, Josh J. Gruber, William R. Poytress

Mismatch between temperature and discharge disrupts spawning cues in a fluvial specialist, blue sucker Cycleptus elongatus

Seasonal movements cued by environmental variables are a critical component of riverine fish life history. Life-history events for species such as blue sucker Cycleptus elongatus are likely cued by discharge and temperature and may be disrupted if those life-history events and environmental regimes are mismatched. However, this effect may be dependent upon the habitat occupied when environmental c
Authors
Matthew Ross Acre, Timothy B. Grabowski, Daniel J. Leavitt, Nathan G. Smith, Allison A. Pease, Preston T. Bean, Dakus Geeslin

Know what you don't know: Embracing state uncertainty in disease-structured multistate models

Hidden Markov models (HMMs) are broadly applicable hierarchical models that derive their utility from separating state processes from observation processes yielding the data. Multistate models such as mark–recapture and dynamic multistate occupancy models are HMMs frequently used in ecology. In their early formulations, states, such as pathogen infection status, were assumed to be perfectly observ
Authors
Matthijs Hollanders, Andy Royle

A characterization of the deep-sea coral and sponge community along the California, Oregon, and Washington coasts using a remotely operated vehicle on the EXPRESS 2019 expedition

NOAA’s Deep-Sea Coral Research Technology Program (DSCRTP) began a 4-year funding initiative for the U.S. West Coast in 2018. The goals of the West Coast Deep-Sea Coral Initiative were to: 1) gather baseline information on DSCS in areas subject to fishing regulation changes prior to the implementation of Amendment 28; 2) improve our understanding of known DSCS bycatch “hot spots”; and 3) explore a
Authors
Tom Laidig, Diana Watters, Nancy G. Prouty, Meredith Everett, Lizzie Duncan, Liz Clarke, Chris Caldow, Jill Bourque, Jennifer McClain Counts, Amanda Demopoulos