Skip to main content
U.S. flag

An official website of the United States government

Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41763

Genetic structure and population history in two critically endangered Kaua‘i honeycreepers

Population sizes of endemic songbirds on Kaua‘i have decreased by an order of magnitude over the past 10–15 years to dangerously low numbers. The primary cause appears to be the ascent of invasive mosquitoes and Plasmodium relictum, the agent of avian malaria, into elevations formerly free of introduced malarial parasites and their vectors. Given that these declines in native bird populations appe
Authors
Loren Cassin-Sackett, Michael G. Campana, Nancy McInerney, Haw Chuan Lim, Natalia Przelomska, Bryce M Masuda, R. Terry Chesser, Eben H. Paxton, Jeffery T Foster, Lisa H. Crampton, Robert C. Fleischer

Using systems thinking to inform management of imperiled species: A case study with sea turtles

Management of imperiled species facing spatiotemporally dynamic threats is difficult. Systems thinking can inform their management by quantifying the impacts that they face. We apply systems thinking to the Northern Gulf of Mexico (NGM) loggerhead (Caretta caretta) Recovery Unit (RU), one of the smallest subpopulations of loggerheads nesting in the USA. We characterized disturbances to nests, mana
Authors
Ian Silver-Gorges, Simona A. Ceriani, Matthew Ware, Megan Lamb, Margaret Lamont, Janice Becker, Raymond Carthy, Chris Matechik, Joseph C. Mitchell, Raya Pruner, Mike Reynolds, Bradley Smith, Caitlyn Snyder, Mariana M. P. B. Fuentes

Riparian forest cover modulates phosphorus storage and nitrogen cycling in agricultural stream sediments

Watershed land cover affects in-stream water quality and sediment nutrient dynamics. The presence of natural land cover in the riparian zone can reduce the negative effects of agricultural land use on water quality; however, literature evaluating the effects of natural riparian land cover on stream sediment nutrient dynamics is scarce. The objective of this study was to assess if stream sediment p
Authors
Rebecca Kreiling, Lynn A. Bartsch, Patrik Mathis Perner, Enrika Hlavacek, Victoria Christensen

Changes in the abundance and distribution of waterfowl wintering in the Central Valley of California, 1973–2000

The Central Valley of California is one of the most important areas for wintering waterfowl in the world and the focus of extensive conservation efforts to mitigate for historical losses and counter continuing stressors to habitats. To guide conservation, we analyzed trends in the abundance and distribution (spatiotemporal abundance patterns) of waterfowl and their habitats in the Central Valley a
Authors
Joseph P. Fleskes, Michael L. Casazza, Cory T. Overton, Elliott Matchett, Julie L. Yee

Nearshore fish species richness and species–habitat associations in the St. Clair–Detroit River System

Shallow water riparian zones of large rivers provide important habitat for fishes, but anthropogenic influences have reduced the availability and quality of these habitats. In the St. Clair–Detroit River System, a Laurentian Great Lakes connecting channel, losses of riparian habitat contributed to impairment of fish populations and their habitats. We conducted a seine survey annually from 2013 to
Authors
Corbin D. Hilling, Jason L. Fischer, Jason E. Ross, Taaja Tucker, Robin L. DeBruyne, Christine M. Mayer, Edward F. Roseman

Soil reservoir dynamics of ophidiomyces ophidiicola, the causative agent of snake fungal disease

Wildlife diseases pose an ever-growing threat to global biodiversity. Understanding how wildlife pathogens are distributed in the environment and the ability of pathogens to form environmental reservoirs is critical to understanding and predicting disease dynamics within host populations. Snake fungal disease (SFD) is an emerging conservation threat to North American snake populations. The causati
Authors
Lewis J. Campbell, Joanna Burger, Robert T. Zappalorti, John F. Bunnell, Megan Winzeler, Daniel R. Taylor, Jeffrey M. Lorch

A decision-analytical framework for developing harvest regulations

The development of harvest regulations for fish or wildlife is a complex decision that needs to weigh multiple objectives, consider a set of alternative regulatory options, integrate scientific understanding about the population dynamics of the harvested species as well as the human response to regulations, account for uncertainty, and provide an avenue for feedback from monitoring programs. The a
Authors
Michael C. Runge

Predictability of invasive Argentine ant distribution across Mediterranean ecoregions of southern California

The invasiveness of nonnative taxa can vary across a landscape due to environmental gradients, suggesting that location-dependent management strategies may be more effective at reducing spread compared to a “one size fits all” approach across the entire introduced range. Using bait stations placed along linear transects within habitat preserves, we tested for effects of ecoregion, vegetation, soil
Authors
Jonathan Q. Richmond, Tritia Matsuda, Cheryl S. Brehme, Emily E. Perkins, Robert N. Fisher

Untargeted lipidomics for determining cellular and sub-cellular responses in Zebrafish (Danio rerio) liver cells following exposure to complex mixtures in U.S. streams

Surface waters often contain a variety of chemical contaminants potentially capable of producing adverse outcomes in both humans and wildlife due to impacts from industrial, urban, and agricultural activity. Here, we report the results of a zebrafish liver (ZFL) cell-based lipidomics approach to assess the potential ecotoxicological effects of complex contaminant mixtures using water collected fro
Authors
Huajun Zhen, Quincy Teng, Jonathan D Mosley, Timothy W. Collette, Yang Yue, Paul M. Bradley, Drew R. Ekman

Integrating wildlife habitat models with state-and-transitions models to enhance the management of rangelands for multiple objectives

State-and-transition models (STMs) are tools used in rangeland management to describe linear and nonlinear vegetation dynamics as conceptual models. STMs can be improved by including additional ecosystem services, such as wildlife habitat, so that managers can predict how local populations might respond to state changes and to illustrate the tradeoffs in managing for different ecosystem services.
Authors
Jennifer M. Timmer, Crystal Y. Tipton, Retta A. Bruegger, David J. Augustine, Christopher P.K. Dickey, Maria E. Fernandez-Gimenez, Cameron L. Aldridge

A hidden Markov model for estimating age-specific survival when age and size are uncertain

Estimates of age-specific survival probabilities are needed for age-structured population models and to inform conservation decisions. However, determining the age of individuals in wildlife populations is often problematic. We present a hidden Markov model for estimating age-specific survival from capture–recapture or capture–recapture–recovery data when age is unknown and indicators of age, such
Authors
Timothy A. Gowan, Michael D. Tringali, Jeffrey A. Hostetler, Julien Martin, Leslie I. Ward-Geiger, Jennifer M Johnson

Quantifying the demographic vulnerabilities of dry woodlands to climate and competition using rangewide monitoring data

Climate change is expected to alter the distribution and abundance of tree species, impacting ecosystem structure and function. Yet, anticipating where this will occur is often hampered by a lack of understanding of how demographic rates, most notably recruitment, vary in response to climate and competition across a species range. Using large-scale monitoring data on two dry woodland tree species
Authors
Robert K Shriver, Charles Yackulic, David M. Bell, John B. Bradford