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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41764

Composition and distribution of fish environmental DNA in an Adirondack watershed

BackgroundEnvironmental DNA (eDNA) surveys are appealing options for monitoring aquatic biodiversity. While factors affecting eDNA persistence, capture and amplification have been heavily studied, watershed-scale surveys of fish communities and our confidence in such need further exploration.MethodsWe characterized fish eDNA compositions using rapid, low-volume filtering with replicate and control
Authors
Robert S. Cornman, James E. McKenna, Jennifer A. Fike

Feral horse space use and genetic characteristics from fecal DNA

Feral horses (Equus ferus caballus) in the western United States are managed by the Bureau of Land Management (BLM) and United States Forest Service in designated areas on public lands with a goal of maintaining populations in balance with multiple uses of the landscape. Small, isolated populations can be at risk of extirpation from stochastic events and deleterious genetic effects resulting from
Authors
Sarah R. B. King, Kathryn A. Schoenecker, Jennifer A. Fike, Sara J. Oyler-McCance

Status of Cisco in Lake Superior in 2017

This report describes the status of fish species and their habitat in Lake Superior during the reporting period of 2012-2016 in response to achievement of fish community objectives (FCOs) established by fishery managers for the lake. The overarching goal for the FCOs continued to be met as the fish community remained diverse, self-regulating, dominated by indigenous species, and able to support su
Authors
Cory Goldsworthy, Daniel Yule

State of Lake Superior ecosystem in 2017

This report describes the status of fish species and their habitat in Lake Superior during the reporting period of 2012-2016 in response to achievement of fish community objectives (FCOs) established by fishery managers for the lake. The overarching goal for the FCOs continued to be met as the fish community remained diverse, self-regulating, dominated by indigenous species, and able to support su
Authors
Bryan G. Matthias, Thomas R. Hrabik, Joel C. Hoffman, Owen Gorman, Mike J Seider, Michael E. Sierszen, Mark Vinson, Daniel Yule, Peder M. Yurista

Analytical validation of two RT-qPCR tests and detection of spring viremia of carp virus (SVCV) in persistently infected koi Cyprinus carpio

Spring viremia of carp virus (SVCV) ia a carp sprivivirus and a member of the genus Sprivivirus within the family Rhabdoviridae. The virus is the etiological agent of spring viremia of carp, a disease of cyprinid species including koi Cyprinus carpio L. and notifiable to the World Organisation for Animal Health. The goal of this study was to explore hypotheses regarding inter-genogroup (Ia to Id)
Authors
Sharon C Clouthier, Tamara Schroeder, Emma K Bueren, Eric D. Anderson, Eveline Emmenegger

Implications of historical and contemporary processes on genetic differentiation of a declining boreal songbird: The rusty blackbird

The arrangement of habitat features via historical or contemporary events can strongly influence genomic and demographic connectivity, and in turn affect levels of genetic diversity and resilience of populations to environmental perturbation. The rusty blackbird (Euphagus carolinus) is a forested wetland habitat specialist whose population size has declined sharply (78%) over recent decades. The s
Authors
Robert E. Wilson, Steven M. Matsuoka, Luke L. Powell, James A. Johnson, Dean W. Demarest, Diana Stralberg, Sarah A. Sonsthagen

Accommodating the role of site memory in dynamic species distribution models

First-order dynamic occupancy models (FODOMs) are a class of state-space model in which the true state (occurrence) is observed imperfectly. An important assumption of FODOMs is that site dynamics only depend on the current state and that variations in dynamic processes are adequately captured with covariates or random effects. However, it is often difficult to understand and/or measure the covari
Authors
Graziella Vittoria Direnzo, David A. W. Miller, Blake R. Hossack, Brent H. Sigafus, Paige E. Howell, Erin L. Muths, Evan H. Campbell Grant

Elk migration influences the risk of disease spillover in the Greater Yellowstone Ecosystem

Wildlife migrations provide important ecosystem services, but they are declining. Within the Greater Yellowstone Ecosystem (GYE) some elk (Cervus canadensis) herds are losing migratory tendencies, which may increase spatiotemporal overlap between elk and livestock (domestic bison [Bison bison] and cattle [Bos taurus]), potentially exacerbating pathogen transmission risk.We combined disease, moveme
Authors
Nathaniel D. Rayl, Jerod Merkle, Kelly Proffitt, E. S. Almberg, Jennifer D. Jones, Justin Gude, Paul C. Cross

Animal reservoirs and hosts for emerging alphacoronaviruses and betacoronaviruses

The ongoing global pandemic caused by coronavirus disease has once again demonstrated the role of the family Coronaviridae in causing human disease outbreaks. Because severe acute respiratory syndrome coronavirus 2 was first detected in December 2019, information on its tropism, host range, and clinical manifestations in animals is limited. Given the limited information, data from other coronaviru
Authors
Ria R. Ghai, Ann Carpenter, Amanda Y. Liew, Krystalyn B. Martin, Meghan K. Herring, Susan I. Gerber, Aron J. Hall, Jonathan M. Sleeman, Sophie VonDobschuetz, Casey Barton Behravesh

Epizootic plague in prairie dogs: Correlates and control with deltamethrin

The plague bacterium, Yersinia pestis, is a generalist pathogen of flea (Siphonaptera) vectors and mammalian hosts. In colonies of prairie dogs (PDs, Cynomys spp.), Y. pestis causes occasional epizootics, killing ≥90% of PDs within weeks to several months. We evaluated the effectiveness of deltamethrin, a pyrethroid insecticide, as a tool for preventing plague epizootics among three PD species. Sp
Authors
Dean E. Biggins, Jerry L. Godbey, David A. Eads

Foreword

No abstract available.
Authors
Frank T. van Manen