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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41756

Differential heat shock protein responses in two species of Pacific salmon and their utility in identifying heat stress

Rapid and accelerating warming of salmon habitat has the potential to lower productivity of Pacific salmon (Oncorhynchus species) populations. Heat stress biomarkers can indicate where warming is most likely affecting fish populations; however, we often lack clear classifications that separate individuals with and without heat stress needed to make these tools operational. We conducted a heat expo
Authors
Vanessa R. von Biela, Amy M. Regish, Lizabeth Bowen, Ashley E. Stanek, Shannon C. Waters, Michael P. Carey, Christian E. Zimmerman, Jonathon Gerken, Daniel Rinella, Stephen D. McCormick

Oil and gas reclamation—Operations, monitoring methods, and standards

This publication provides broad guidance for surface management of oil and gas development with a focus on promoting successful reclamation. Successful reclamation depends on sound best management practices, clear standards and expectations, defensible monitoring for effectiveness, and management of production facilities to minimize surface disturbance. This publication provides specific guideline
Authors
Randi C. Lupardus, Janna Simonsen, Gordon Toevs, Barbara Sterling, Zachary H. Bowen, Zoe Davidson, Steve E. Hanser, Emily Kachergis, Alexander Laurence-Traynor, Nika Lepak, Rebecca K. Mann, Aleta Nafus, David S. Pilliod, Michael C. Duniway

Chromosome-level genome assembly of the blacktail brush lizard, Urosaurus nigricaudus, reveals dosage compensation in an endemic lizard

Urosaurus nigricaudus is a phrynosomatid lizard endemic to the Baja California Peninsula in Mexico. This work presents a chromosome-level genome assembly and annotation from a male individual. We used PacBio long reads and HiRise scaffolding to generate a high-quality genomic assembly of 1.87 Gb distributed in 327 scaffolds, with an N50 of 279 Mb and an L50 of 3. Approximately 98.4% of the genome
Authors
Elizabeth Davalos-Dehullu, Sarah M. Baty, Robert N. Fisher, Peter A. Scott, Greer A. Dolby, Adrian Munguia-Vega, Diego Cortez

Reservoir stratification modulates the influence of impoundments on fish mercury concentrations along an arid land river system

Impoundment is among the most common hydrologic alterations with impacts on aquatic ecosystems that can include effects on mercury (Hg) cycling. However, landscape-scale differences in Hg bioaccumulation between reservoirs and other habitats are not well characterized nor are the processes driving these differences. We examined total Hg (THg) concentrations of Smallmouth Bass (Micropterus dolomieu
Authors
James Willacker, Collin Eagles-Smith, Jim Chandler, Jesse Naymik, Ralph Myers, David P. Krabbenhoft

A review of natural and managed revegetation responses in two de-watered reservoirs after large dam removals on the Elwha River, Washington, USA

Large dam removals are increasing in frequency and the response of natural and managed revegetation is a critical consideration for managed restoration of dewatered reservoir landscapes post dam removal. The removal of two large dams on the Elwha River in 2011-2014 provides insight into reservoir revegetation. We review literature and datasets from 2012 through 2018, 1-6 years since reservoir dewa
Authors
Joshua Chenoweth, Patrick B. Shafroth, Rebecca L. Brown, James M. Helfield, Jenise M. Bauman, Sara Cendejas-Zarelli, Chhaya M. Werner, Jarrett L. Schuster, Olivia A. Morgan

Selection of microhabitats, plants, and plant parts eaten by a threatened tortoise: Observations during a superbloom

Populations of the threatened desert tortoise (Gopherus agassizii) continue to decline throughout the geographic range, in part because of degraded and fragmented habitats in the Mojave and western Sonoran deserts. The species is herbivorous and highly selective in choice of plant species. To increase options for recovery, we analyzed behaviors, patterns of movements while foraging, and parts of p
Authors
W. Bryan Jennings, Kristin H. Berry

Paranannizziopsis spp. infections in wild snakes and a qPCR assay for detection of the fungus

The emergence of ophidiomycosis (or snake fungal disease) in snakes has prompted increased awareness of the potential effects of fungal infections on wild reptile populations. Yet, aside from Ophidiomyces ophidiicola, little is known about other mycoses affecting wild reptiles. The closely related genus Paranannizziopsis has been associated with dermatomycosis in snakes and tuataras in captive col
Authors
Jeffrey M. Lorch, Megan Winzeler, Julia S. Lankton, Stephen Raverty, Heindrich N Snyman, Helen M. Schwantje, Caeley Thacker, Susan Knowles, Hugh Y Cai, Daniel A. Grear

Proximity to roads does not modify inorganic nitrogen deposition in a topographically complex, high traffic, subalpine forest

Vehicles are an important source for N deposition that may negatively impact roadside ecosystems. While elevated roadside N deposition has been found in many locations, it is not yet known if vehicle emissions cause measurable increases of N deposition in complex, mountainous terrain adjacent to roads. To address this, this study investigated the effect of vehicle N emissions on throughfall (throu
Authors
Katherine S. Rocci, M. Francesca Catrufo, Jill Baron

Shifting hotspots: Climate change projected to drive contractions and expansions of invasive plant abundance habitats

AimPreventing the spread of range-shifting invasive species is a top priority for mitigating the impacts of climate change. Invasive plants become abundant and cause negative impacts in only a fraction of their introduced ranges, yet projections of invasion risk are almost exclusively derived from models built using all non-native occurrences and neglect abundance information.LocationEastern USA.M
Authors
Annette E. Evans, Catherine S. Jarnevich, Evelyn M. Beaury, Peder S. Engelstad, Nathan B. Teich, Jillian LaRoe, Bethany A. Bradley

Examining current bias and future projection consistency of globally downscaled climate projections commonly used in climate impact studies

The associated uncertainties of future climate projections are one of the biggest obstacles to overcome in studies exploring the potential regional impacts of future climate shifts. In remote and climatically complex regions, the limited number of available downscaled projections may not provide an accurate representation of the underlying uncertainty in future climate or the possible range of pot
Authors
Lucas Fortini, Lauren R. Kaiser, Abby G. Frazier, Thomas W Giambelluca

Blue snowflakes in a warming world: Karner blue butterfly climate change vulnerability synthesis and best practices for adaptation

This report—developed at the request of the United States Fish and Wildlife Service-led Karner Blue Butterfly Recovery Team by Recovery Team members and partners—provides a Karner blue butterfly climate change vulnerability synthesis, explores a range of potential responses, and presents best practices for climate change-informed conservation of the species.The three decades since the Karner blue
Authors
Gregor W. Schuurman, Christopher L. Hoving, Anna N. Hess, Lainey V. Bristow, Philip J. Delphey, Jessica J. Hellmann, Heather L. Keough, Randy L. Knutson, Annie Kellner

Bridging the gap between mathematical biology and undergraduate education using applicable natural resource modeling

Mathematical biology is a wide field of study with many venues that undergraduate students can access through research. However, the topics of study for these students can be overwhelming, and many topics of study yield either only trivial results or abstract outcomes that are nonintuitive and diffcult to understand. We have used natural resource modeling, and more specifically, a partnership betw
Authors
Richard A. Erickson, Douglas Baumann, Barbara Bennie, Wako Bungula, Aaron R. Cupp, James E. Diffendorfer, Eric A. Eager, Roger J. Haro, Kathi Jo Jankowski, Danelle M. Larson, Greg J. Sandland, Molly Van Appledorn, James P Peirce