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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41778

Acoustic space occupancy: Combining ecoacoustics and lidar to model biodiversity variation and detection bias across heterogeneous landscapes

There is global interest in quantifying changing biodiversity in human-modified landscapes. Ecoacoustics may offer a promising pathway for supporting multi-taxa monitoring, but its scalability has been hampered by the sonic complexity of biodiverse ecosystems and the imperfect detectability of animal-generated sounds. The acoustic signature of a habitat, or soundscape, contains information about m
Authors
Danielle I. Rappaport, J. Andrew Royle, Douglas C. Morton

Does Lake Erie still have sufficient oxythermal habitat for cisco Coregonus artedi?

In Lake Erie, cisco Coregonus artedi once supported one of the most valuable freshwater fisheries on earth, yet overfishing caused their eventual extirpation from the lake. With warming lake temperatures, some have questioned whether Lake Erie still contains suitable oxythermal conditions for cisco. Using published oxythermal thresholds for cisco and oxythermal profiles from Lake Erie, we sought
Authors
Joseph Schmitt, Christoper S. Vandergoot, Brian P. O'Malley, Richard Kraus

GoMAMN Strategic Bird Monitoring Guidelines: Landbirds

Landbirds in the Gulf of Mexico region include an ecologically diverse group of taxa that depend on a wide range of terrestrial habitats and the airspace above them. For the GoMAMN region of the Gulf of Mexico, the Landbird Working Group identified 19 species from 12 families as priorities for monitoring (Table 3.1). In addition, all species that stopover within the GoMAMN region during migration
Authors
Theodore J. Zenzal, William G. Vermillion, Jacqueline R. Ferrato, Lori A. Randall, Robert Christopher Dobbs, Heather Baldwin

Serosurvey of coyotes (Canis latrans), foxes (Vulpes vulpes, Urocyon cinereoargenteus) and raccoons (Procyon lotor) for exposure to influenza A viruses in the USA

We tested coyote (Canis latrans), fox (Urocyon cinereoargenteus, Vulpes vulpes), and raccoon (Procyon lotor) sera for influenza A virus (IAV) exposure. We found 2/139 samples (1 coyote, 1 raccoon) had IAV antibodies and hemagglutination inhibition assays revealed the antibodies to the 2009/2010 H1N1 human pandemic virus or to the 2007 human seasonal H1N1 virus.
Authors
Marit A. Bakken, Sean Nashold, Jeffrey S. Hall

Tissue distribution and immunomodulation in channel catfish (Ictalurus punctatus) following dietary exposure to polychlorinated biphenyl Aroclors and food deprivation

Although most countries banned manufacturing of polychlorinated biphenyls (PCBs) over 40 years ago, PCBs remain a global concern for wildlife and human health due to high bioaccumulation and biopersistance. PCB uptake mechanisms have been well studied in many taxa; however, less is known about depuration rates and how post-exposure diet can influence PCB concentrations and immune response in fish
Authors
Sahnnon L White, Devin A DeMario, Luke R. Iwanowicz, Vicki S. Blazer, Tyler Wagner

Factors facilitating co-occurrence at the Range Boundary of Shenandoah and Red-backed Salamanders

The transition from species in allopatry to sympatry, i.e., the co-occurrence zone of competing species, allows for investigation of forces structuring range limits and provides evidence of the evolutionary and population responses of competing species, including mechanisms facilitating co-occurrence (e.g., character displacement). The Shenandoah Salamander (Plethodon shenandoah), an endangered pl
Authors
Staci M. Amburgey, David A. W. Miller, Adrianne B. Brand, Andrew E Dietrich, Evan H. Campbell Grant

Carbon stock trends of baldcypress knees along climate gradients of the Mississippi River Alluvial Valley using allometric methods

Carbon stock trends of the knees of Taxodium distichum likely vary across climate gradients of the southeastern United States and contribute an unknown quantity of “teal” carbon to inland freshwater wetlands. Knee metrics (e.g., density, height, biomass) were measured in mixed T. distichum swamps across the Mississippi River Alluvial Valley (MRAV) from Illinois to Louisiana. Based on their geometr
Authors
Beth A. Middleton

Human-associated species dominate passerine communities across the United States

AimHuman development and agriculture can have transformative and homogenizing effects on natural systems, shifting the composition of ecological communities towards non-native and native species that tolerate or thrive under human-dominated conditions. These impacts cannot be fully captured by summarizing species presence, as they include dramatic changes to patterns of species abundance. However,
Authors
Helen Sofaer, Curtis H. Flather, Catherine S. Jarnevich, Kristin P. Davis, Liba Pejchar

Waterfowl occurrence and residence time as indicators of H5 and H7 avian influenza in North American Poultry

Avian influenza (AI) affects wild aquatic birds and poses hazards to human health, food security, and wildlife conservation globally. Accordingly, there is a recognized need for new methods and tools to help quantify the dynamic interaction between wild bird hosts and commercial poultry. Using satellite-marked waterfowl, we applied Bayesian joint hierarchical modeling to concurrently model specie
Authors
John M. Humphreys, Andy Ramey, David C. Douglas, Jennifer M. Mullinax, Catherine Soos, Paul T. Link, Patrick Walther, Diann J. Prosser

A review of Cattail (Typha) invasion in North American wetlands

OverviewCattail (Typha) is an iconic emergent wetland plant found worldwide. By producing an abundance of wind-dispersed seeds, cattail can colonize wetlands across great distances, and its rapid growth rate, large size, and aggressive expansion result in dense stands in a variety of aquatic ecosystems such as marshes, ponds, lakes, and riparian areas. Cattail can also quickly dominate disturbed a
Authors
Sheel Bansal, Brian Tangen, Shane Lishawa, Sue Newman, Douglas Wilcox

Spatial and temporal trends in Potomac River fish abundance linked to species traits

Analysis of species abundance trends can inform an understanding of the underlying mechanisms. We evaluated spatial and temporal trends in fish species abundance in the non-tidal Potomac River (USA) from a dataset comprising 2841 seine-hauls with > 250,000 individual fish records across 10 sites and 43 years (1975-2017). The dataset contained 47 species from 7 taxonomic families, with species rich
Authors
Nathaniel P. Hitt, Karli Rogers, Zachary A. Kelly, Josh Henesy, John E. Mullican

Timing, frequency, and duration of incubation recesses in dabbling ducks

Nest attendance is an important determinant of avian reproductive success, and identifying factors that influence the frequency and duration of incubation recesses furthers our understanding of how incubating birds balance their needs with those of their offspring. We characterized the frequency and timing (start time, end time, and duration) of incubation recesses for mallard (Anas platyrhynchos)
Authors
Rebecca Croston, C. Alex Hartman, Mark P. Herzog, Michael L. Casazza, Cliff L. Feldheim, Joshua T. Ackerman