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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41756

Evaluation of replicate sampling using hierarchical spatial modeling of population surveys accounting for imperfect detectability

Effective species management and conservation benefit from knowledge of species distribution and status. Surveys to obtain that information often involve replicate sampling, which increases survey effort and costs. We simultaneously modeled species distribution, abundance and spatial correlation, and compared the uncertainty in replicate abundance estimates of the endangered palila (Loxioides bail
Authors
Richard J. Camp, Chauncey K. Asing, Paul C. Banko, Lainie Berry, Kevin W. Brinck, Chris Farmer, Ayesha Genz

Satellite-derived plant cover maps vary in performance depending on version and product

Understanding the accuracy and appropriate application scale of satellite-derived maps of vegetation cover is essential for effective management of the vast, remote rangelands of the world. However, the underlying models are updated frequently and may combine with rapidly changing vegetation conditions to cause variations in accuracy and precision over time. We sought to assess how model performan
Authors
Cara Applestein, Matthew Germino

Morphological differences between wild and hatchery-reared Bloater (Coregonus hoyi) from Lake Michigan, USA

Coregonines (ciscoes and whitefishes) are economically, ecologically, and culturally important fishes that are distributed throughout the Northern Hemisphere. In the Laurentian Great Lakes, coregonines declined throughout the 19th and 20th centuries, and managers have prioritized their restoration. A key restoration tool is reintroduction via stocking. However, hatchery-reared coregonines can disp
Authors
Andrew Edgar Honsey, Yu-Chun Kao, Christopher Olds, David Bunnell

Stocking fish in inland waters: Opportunities and risks for sustainable food systems

Stocking is one of the foremost tools in the inland fisheries management toolbox, but it comes with both opportunities and risks. Stocking is often used as compensation for depleted wild populations, particularly where recruitment processes have been disrupted, but it can introduce disease, disrupt community structures, reduce genetic integrity, and cause conflicts between fishery stakeholders. De
Authors
Ian G. Cowx, Simon Funge-Smith, Abigail Lynch

Mangrove forests and climate change: Impacts and interactions

The position of mangrove forests in the dynamic intertidal zone means that they are expected to be heavily impacted by climate change. Much focus is put on mangroves and their response to sea-level rise, but this ecosystem is exposed to a much broader range of climate change stressors, including increased storminess and waves, more dynamic and unpredictable precipitation patterns, and increases in
Authors
Daniel A. Friess, Luzhen Chen, Nicole Cormier, Ken Krauss, Catherine E. Lovelock, Jacqueline L. Raw, Kerrylee Rogers, Neil Saintilan, Frida Sidik

PopEquus: a predictive modeling tool to support management decisions for free-roaming horse populations

Feral horse (Equus caballus) population management is a challenging problem around the world because populations often exhibit density-independent growth, can exert negative ecological effects on ecosystems, and require great cost to be managed. However, strong value-based connections between people and horses cause contention around management decisions. To help make informed decisions, natural r
Authors
Brian Patrick Folt, Kathryn A. Schoenecker, L. Stefan Ekernas, David R. Edmunds, Mark T. Hannon

Molecular data validate historical and contemporary distributions of Pleurobema riddellii (Bivalvia: Unionidae) and help guide conservation and recovery efforts

Accurate taxonomic and distributional information are arguably the most critical components of conservation status assessments but can be greatly affected by misidentifications. The Louisiana pigtoe Pleurobema riddellii is a freshwater mussel proposed as threatened under the US Endangered Species Act. The species belongs to the tribe Pleurobemini, which includes multiple taxa that are inherently c
Authors
Nathan Johnson, Caitlin Beaver, Alexander H. Kiser, Matthew A. Duplessis, Matthew D. Wagner, Robert J. Ellwanger, Clinton R. Robertson, Sean D. Kinney, Beau B. Gregory, Steve Wolverton, Charles R. Randklev, Paul D. Hartfield, James D. Williams, Chase H. Smith

An inconvenient trend: Decadal decline in ground height of swamps in Southern Illinois

An understanding of the long-term trends of ground height and sedimentation in a landscape context can provide a framework to better understand the impacts of agricultural development on floodplain processes. This study examined long-term changes in ground height using surface elevation tables (SETs) and sediment deposition measurements in the Cache River floodplains of Southern Illinois including
Authors
Beth Middleton

Hepatotoxic response of perfluorooctane sulfonamide (PFOSA) in early life stage zebrafish (Danio rerio) is greater than perfluorooctane sulfonate (PFOS)

Perfluorooctane sulfonamide (PFOSA), a typical perfluorooctane sulfonate precursor (PreFOS), has been detected in the aquatic environment globally. However, the effects of PFOSA at levels measured in the environment have not been well characterized in aquatic organisms. In this study, we evaluated the transcriptional, biochemical, histopathological, and morphological effects of PFOSA to characteri
Authors
Rongrong Xuan, Xiaojian Qiu, Jiazhen Wang, Shai Liu, Jason Tyler Magnuson, Bentuo Xu, Wenhui Qui, Chunmiao Zheng

A comparison of summer, fall and winter estimates of monarch population size before and after milkweed eradication from crop fields in North America

Measures of the area occupied by overwintering monarchs in México since the mid-1990s show a decline. Summer surveys of monarchs, however, do not show a similar decline. This discrepancy has led to the proposition that summer monarch numbers are actually stable and that increasing mortality during migration has led to declining overwintering numbers. A competing hypothesis is that this discrepancy
Authors
John M. Pleasants, Wayne E. Thogmartin, Karen Oberhauser, Orley (Chip) Taylor, Carl Stenoien

Identifying sources of antibiotic resistance genes in the environment using the microbial Find, Inform, and Test framework

Introduction: Antimicrobial resistance (AMR) is an increasing public health concern for humans, animals, and the environment. However, the contributions of spatially distributed sources of AMR in the environment are not well defined.Methods: To identify the sources of environmental AMR, the novel microbial Find, Inform, and Test (FIT) model was applied to a panel of five antibiotic resistance-asso
Authors
Corinne Wiesner-Friedman, Rachelle Elaine Beattie, Jill R. Stewart, Krassimira R. Hristova, Marc L. Serre

Large-scale variation in lakebed properties interpreted from single-beam sonar in two Laurentian Great Lakes

Acoustic seabed classification (ASC) is an important method for understanding landscape-level physical and biological patterns in the aquatic environment. Bottom habitats in the Laurentian Great Lakes are poorly mapped to date, and will require a variety of contributors and data sources to complete. We repurposed a long-term split-beam echosounder dataset gathered for purposes of fisheries assessm
Authors
Samuel Pecoraro, Peter C. Esselman, Timothy P. O'Brien, Steve A. Farha, David Warner