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Publications

Below is a list of available WFRC peer reviewed and published science.

Filter Total Items: 2489

Disease surveillance of Atlantic herring: molecular characterization of hepatic coccidiosis and a morphological report of a novel intestinal coccidian

Surveillance for pathogens of Atlantic herring, including viral hemorrhagic septicemia virus (VHSV),Ichthyophonus hoferi, and hepatic and intestinal coccidians, was conducted from 2012 to 2016 in the NW Atlantic Ocean, New Jersey, USA. Neither VHSV nor I. hoferi was detected in any sample. Goussia clupearum was found in the livers of 40 to 78% of adult herring in varying parasite loads; however, a
Authors
Sarah E Friend, J Lovey, Paul Hershberger

Identifying bird and reptile vulnerabilities to climate change in the southwestern United States

Current and future breeding ranges of 15 bird and 16 reptile species were modeled in the Southwestern United States. Rather than taking a broad-scale, vulnerability-assessment approach, we created a species distribution model (SDM) for each focal species incorporating climatic, landscape, and plant variables. Baseline climate (1940–2009) was characterized with Parameter-elevation Regressions on In
Authors
James R. Hatten, J. Tomasz Giermakowski, Jennifer A. Holmes, Erika M. Nowak, Matthew J. Johnson, Kirsten E. Ironside, Charles van Riper, Michael Peters, Charles Truettner, Kenneth L. Cole

Anadromous salmonids in the Delta: New science 2006–2016

As juvenile salmon enter the Sacramento–SanJoaquin River Delta (“the Delta”) they disperse among its complex channel network where they are subject to channel-specific processes that affect their rate of migration, vulnerability to predation, feeding success, growth rates, and ultimately, survival. In the decades before 2006, tools available to quantify growth, dispersal, and survival of juven
Authors
Russell W. Perry, Rebecca A. Buchanan, Patricia L. Brandes, Jon R. Burau, Joshua A Israel

Estimating juvenile Chinook salmon (Oncorhynchus tshawytscha) abundance from beach seine data collected in the Sacramento–San Joaquin Delta and San Francisco Bay, California

Resource managers rely on abundance or density metrics derived from beach seine surveys to make vital decisions that affect fish population dynamics and assemblage structure. However, abundance and density metrics may be biased by imperfect capture and lack of geographic closure during sampling. Currently, there is considerable uncertainty about the capture efficiency of juvenile Chinook salmon (O
Authors
Russell W. Perry, Joseph E. Kirsch, A. Noble Hendrix

Taxonomy of the order Mononegavirales: update 2016

In 2016, the order Mononegavirales was emended through the addition of two new families (Mymonaviridae and Sunviridae), the elevation of the paramyxoviral subfamily Pneumovirinae to family status (Pneumoviridae), the addition of five free-floating genera (Anphevirus, Arlivirus, Chengtivirus, Crustavirus, and Wastrivirus), and several other changes at the genus and species levels. This article pres
Authors
C.L. Afonso, Gael Kurath, 82 Additional Authors

Predation on larval suckers in the Williamson River Delta revealed by molecular genetic assays—A pilot study

Predation of endangered Lost River suckers (Deltistes luxatus) and shortnose suckers (Chasmistes brevirostris) during larval egress to Upper Klamath Lake from the Williamson River is poorly understood but may be an important factor limiting recruitment into adult spawning populations. Native and non-native piscivores are abundant in nursery wetland habitat, but larval predation has not been direct
Authors
Danielle M. Hereford, Carl O. Ostberg, Summer M. Burdick

Ecology of nonnative Siberian prawn (Palaemon modestus) in the lower Snake River, Washington, USA

We assessed the abundance, distribution, and ecology of the nonnative Siberian prawn Palaemon modestus in the lower Snake River, Washington, USA. Analysis of prawn passage abundance at three Snake River dams showed that populations are growing at exponential rates, especially at Little Goose Dam where over 464,000 prawns were collected in 2015. Monthly beam trawling during 2011–2013 provided infor
Authors
John M. Erhardt, Kenneth F. Tiffan

Carbon dioxide as a tool to deter the movement of invasive bigheaded carps

Nonnative bigheaded carps are established in the Mississippi River and there is substantial concern about their potential entry into the interconnected Laurentian Great Lakes. While electrical barriers currently exist as a preventative measure, there is need for additional control mechanisms to promote barrier security through redundancy. We tested the effectiveness of infused carbon dioxide gas (
Authors
Michael R. Donaldson, Jon Amberg, Shivani Adhikari, Aaron R. Cupp, Nathan Jensen, Jason G. Romine, Adam Wright, Mark P. Gaikowski, Cory D. Suski

Recommended reporting standards for test accuracy studies of infectious diseases of finfish, amphibians, molluscs and crustaceans: the STRADAS-aquatic checklist

Complete and transparent reporting of key elements of diagnostic accuracy studies for infectious diseases in cultured and wild aquatic animals benefits end-users of these tests, enabling the rational design of surveillance programs, the assessment of test results from clinical cases and comparisons of diagnostic test performance. Based on deficiencies in the Standards for Reporting of Diagnostic A
Authors
Ian A Gardner, Richard J Whittington, Charles G B Caraguel, Paul Hick, Nicholas J G Moody, Serge Corbeil, Kyle A. Garver, Janet V. Warg, Isabelle Arzul, Maureen K. Purcell, Mark St. J. Crane, Thomas B. Waltzek, Niels J Olesen, Alicia Gallardo Lagno

Angler harvest, hatchery return, and tributary stray rates of recycled adult summer steelhead Oncorhynchus mykiss in the Cowlitz River, Washington

Hatchery ‘recycling’ programs have been used to increase angling opportunities by re-releasing fish into a river after they returned to a hatchery or fish trap. Recycling is intended to increase opportunities for fishermen, but this strategy could affect wild fish populations if some recycled fish remain in the river and interact with wild fish populations. To quantify hatchery return and angler h
Authors
Tobias J. Kock, Russell W. Perry, Chris Gleizes, Wolf Dammers, Theresa L. Liedtke

Salmon and steelhead in the White Salmon River after the removal of Condit Dam–Planning efforts and recolonization results

Condit Dam, at river kilometer 5.3 on the White Salmon River, Washington, was breached in 2011 and completely removed in 2012. This action opened habitat to migratory fish for the first time in 100 years. The White Salmon Working Group was formed to create plans for fish salvage in preparation for fish recolonization and to prescribe the actions necessary to restore anadromous salmonid populations
Authors
Brady Allen, Rod O Engle, Joseph S Zendt, Frank C Shrier, Jeremy T Wilson, Patrick J. Connolly

Construction, calibration, and validation of the RBM10 water temperature model for the Trinity River, northern California

We constructed a one-dimensional daily averaged water-temperature model to simulate Trinity River temperatures for 1980–2013. The purpose of this model is to assess effects of water-management actions on water temperature and to provide water temperature inputs for a salmon population dynamics model. Simulated meteorological data, observed streamflow data, and observed water temperatures were used
Authors
Edward C. Jones, Russell W. Perry, John C. Risley, Nicholas A. Som, Nicholas J. Hetrick