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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41771

Sharing land via keystone structure: Retaining naturally regenerated trees may efficiently benefit birds in plantations

Meeting food/wood demands with increasing human population and per-capita consumption is a pressing conservation issue, and is often framed as a choice between land sparing and land sharing. Although most empirical studies comparing the efficacy of land sparing and sharing supported land sparing, land sharing may be more efficient if its performance is tested by rigorous experimental design and ha
Authors
Yuichi Yamaura, Akira Unno, Andy Royle

A genetic warning system for a hierarchically structured wildlife monitoring framework

Genetic variation is a well-known indicator of population fitness yet is not typically included in monitoring programs for sensitive species. Additionally, most programs monitor populations at one scale, which can lead to potential mismatches with ecological processes critical to species' conservation. Recently developed methods generating hierarchically nested population units (i.e., clusters of
Authors
Shawna J Zimmerman, Cameron L. Aldridge, Michael O'Donnell, David R. Edmunds, Peter S. Coates, Brian G. Prochazka, Jennifer A. Fike, Todd B. Cross, Bradley C. Fedy, Sara J. Oyler-McCance

Terrestrial lidar monitoring of the effects of Glen Canyon Dam operations on the geomorphic condition of archaeological sites in Grand Canyon National Park, 2010–2020

The U.S. Geological Survey’s Grand Canyon Monitoring and Research Center, in coordination with the Glen Canyon Dam Adaptive Management Program, has monitored the geomorphic condition of select archaeological sites along the Colorado River in Grand Canyon using high-resolution terrestrial light detection and ranging (lidar) topographic surveys. Many of these sites are vulnerable to degradation by n
Authors
Joshua Caster, Joel B. Sankey, Helen Fairley, Alan Kasprak

Comparison of two estrogen chemically activated luciferase expression cell bioassays to liquid chromatography–mass spectrometry for quantifying estrone in water samples

Chemically activated luciferase expression (CALUX) cell bioassays are popular tools for assessing endocrine activity of chemicals such as certain environmental contaminants. Although activity equivalents can be obtained from CALUX analysis, directly comparing these equivalents to those obtained from analytical chemistry methods can be problematic because of the complexity of endocrine active pathw
Authors
Jennifer C. Brennan, Abigail Henke, Robert Gale, Diane K. Nicks, Donald Tillitt

Habitat connectivity and host relatedness influence virus spread across an urbanising landscape in a fragmentation-sensitive carnivore

Spatially heterogeneous landscape factors such as urbanisation can have substantial effects on the severity and spread of wildlife diseases. However, research linking patterns of pathogen transmission to landscape features remains rare. Using a combination of phylogeographic and machine learning approaches, we tested the influence of landscape and host factors on feline immunodeficiency virus (FIV
Authors
Christopher P. Kozakiewicz, Christopher P. Burridge, Justin S. Lee, Simona J Kraberger, Nicholas M Fountain-Jones, Robert N. Fisher, Lisa M. Lyren, Megan K. Jennings, Seth P D Riley, Laurel E K Serieys, Meggan E. Craft, W Chris Funk, Kevin R. Crooks, Sue VandeWoude, Scott Carver

Estimating phosphorus retention capacity of flow-through wetlands

A Bayesian hierarchical modeling approach is introduced to pool data properly from multiple flow-through wetlands to estimate wetland-specific long-term phosphorus retention capacity. By pooling data from multiple wetlands, we overcome the difficulties in estimating the effectiveness of using constructed and natural wetlands for nutrient reduction. The Bayesian hierarchical modeling approach reduc
Authors
Song S. Qian, Kristi K. Arend, Stephen J Jacquemin, S. Mazeika Patricio Sullivan, Kurt P. Kowalski

North American Bat Monitoring Program (NABat) mobile acoustic transect surveys standard operating procedure 3—Conducting mobile transect surveys

This standard operating procedure (SOP) provides instructions and considerations for conducting mobile acoustic surveys along road transects to collect bat acoustic data following the North American Bat Monitoring Program (NABat) protocol and sample design. This report discusses measures for ensuring the safety of surveyors and efficiency of mobile transect surveys. This guidance is intended to ai
Authors
Jaclyn Martin, MacKenzie Hall, Emily Ferrall, Han Li, Jason Rae, Bethany Straw, Brian Reichert

North American Bat Monitoring Program (NABat) mobile acoustic transect surveys standard operating procedure 1—Locating and establishing mobile transect routes

This document is the first of three standard operating procedures (SOPs) providing instructions and considerations for conducting mobile acoustic surveys along road transects to collect bat acoustic data following the North American Bat Monitoring Program (NABat) protocol and sample design. This SOP focuses specifically on selecting NABat grid cells and establishing mobile transect survey routes u
Authors
Jaclyn Martin, Dane Smith, Han Li, MacKenzie Hall, Emily Ferrall, Jason Rae, Bethany Straw, Brian Reichert

North American Bat Monitoring Program (NABat) Mobile Acoustic Transect Surveys Standard Operating Procedure 2—Field Season and Survey Preparation

This document is the second of three standard operating procedures providing instructions and considerations for conducting mobile acoustic surveys along road transects to collect bat acoustic data following the North American Bat Monitoring Program (NABat) protocol and sample design. This standard operating procedure focuses specifically on considerations for establishing the field survey season
Authors
Jaclyn Martin, Jason Rae, MacKenzie Hall, Emily Ferrall, Han Li, Bethany Straw, Brian Reichert

Soil elevation change in mangrove forests and marshes of the greater Everglades: A regional synthesis of surface elevation table-marker horizon (SET-MH) data

Coastal wetlands adapt to rising seas via feedbacks that build soil elevation, which lead to wetland stability. However, accelerated rates of sea-level rise can exceed soil elevation gain, leading to wetland instability and loss. Thus, there is a pressing need to better understand regional and landscape variability in rates of wetland soil elevation change. Here, we conducted a regional synthesis
Authors
Laura Feher, Michael Osland, Karen L. McKee, Kevin R.T. Whelan, Carlos A. Coronado-Molina, Fred H. Sklar, Ken Krauss, Rebecca Howard, Donald Cahoon, James C. Lynch, Lukas Lamb-Wotton, Tiffany G. Troxler, Jeremy R. Conrad, Gordon Anderson, William C. Vervaeke, Thomas J. Smith III, Nicole Cormier, Andrew From, Larry Allain

Cryptic declines of small, cold-water specialists highlight potential vulnerabilities of headwater streams as climate refugia

Increasing temperatures and climate-driven disturbances like wildfire are a growing threat to many species, including cold-water specialists. Montane areas and cold streams are often considered climate refugia that buffer communities against change. However, climate refugia are often species-specific, and despite growing awareness that life histories and habitat requirements shape responses to cha
Authors
Blake R. Hossack, Michael LeMoine, Emily Oja, Lisa A Eby

Indigenous fire management and cross-scale fire-climate relationships in the Southwest United States from 1500 to 1900 CE

Prior research suggests that Indigenous fire management buffers climate influences on wildfires, but it is unclear whether these benefits accrue across geographic scales. We use a network of 4824 fire-scarred trees in Southwest United States dry forests to analyze up to 400 years of fire-climate relationships at local, landscape, and regional scales for traditional territories of three different I
Authors
Chris I. Roos, Christopher H. Guiterman, Ellis Margolis, Thomas W. Swetnam, Nicholas C. Laluk, Kerry F. Thompson, Chris Toya, Calvin A. Farris, Peter Z. Fulé, Jose M. Iniguez, J. Mark Kaib, Christopher D. O’Connor, Lionel Whitehair