Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 41771
Book review: Quasispecies as a unifying concept in population dynamics
The quasispecies concept had two independent origins. One source was the theoretical ideas of Manfred Eigen and Peter Schuster in the 1970s. Studying the self-organization and evolution of primitive RNA molecules, they defined quasispecies as a distribution of mutant viral genomes generated by the mutation-selection process. In particular, the quasispecies nucleotide distribution consists of a sin
Authors
Don DeAngelis
Wetland occupancy by duck broods in cropland-dominated landscapes of the United States Prairie Pothole Region
The Prairie Pothole Region (PPR) is globally important for breeding waterfowl but has been altered via wetland drainage and grassland conversion to accommodate agricultural land use. Thus, understanding the ecology of waterfowl in these highly modified landscapes is essential for their conservation. Brood occurrence is the cumulative outcome of key life-history events including pair formation and
Authors
Blake J Mitchell, Catrina V Terry, Kevin M Ringelman, Kaylan M Kemink, Michael J. Anteau, Adam K. Janke
Declines in reproductive condition of male largemouth bass (Micropterus salmoides) following seasonal exposure to estrogenic endocrine-disrupting compounds
Reproductive abnormalities, that could lead to possible effects at the population level, have been observed in wild fish throughout the United States, with high prevalence in largemouth bass (LMB; Micropterus salmoides) and smallmouth bass (Micropterus dolomieu). Estrone (E1) and atrazine (ATR) are common environmental contaminants often associated with agricultural land use. 17alpha-ethinylestrad
Authors
Jessica Kristin Leet, Cathy A. Richter, Robert Gale, Donald E. Tillitt, Jill Jenkins
Climate change and ‘alien species in National Parks’: Revisited
The US National Park Service mission includes conserving native species and historical landscapes ‘unimpaired for the enjoyment of future generations’. However, humans have increased the introduction of non-native species that can become invasive and which have harmful impacts on native species and landscapes. We revisit two previous papers, ‘Alien Species in National Parks: Drawing Lines in Space
Authors
Catherine S. Jarnevich, Terri Hogan, Jennifer Sieracki, Christine Lipsky, John Wullschleger
Genetic architecture and evolution of color variation in American black bears
Color variation is a frequent evolutionary substrate for camouflage in small mammals, but the underlying genetics and evolutionary forces that drive color variation in natural populations of large mammals are mostly unexplained. The American black bear, Ursus americanus (U. americanus), exhibits a range of colors including the cinnamon morph, which has a similar color to the brown bear, U. arctos,
Authors
E. Puckett, I. S. Davis, D. C. Harper, K. Wakamatsu, G. Battu, J. L. Belant, D. E. Beyer, C. Carpenter, A. P. Crupi, M. Davidson, C. S. DePerno, N. Forman, N. L. Fowler, D. L. Garshelis, N. Gould, K. Gunther, Mark A. Haroldson, S. Ito, David. M Kocka, C. Lackey, R. Leahy, C. Lee-Roney, T. Lewis, A. Lutto, K. McGowan, C. Olfenbuttel, M. Orlando, A. Platt, M. D. Pollard, M. Ramaker, Heather Reich, Jaime L. Sajecki, S. K. Sell, J. Strules, S. Thompson, Frank T. van Manen, Craig Whitman, R. Williamson, F. Winslow, C. B. Kaelin, M. S. Marks, G. S. Barsh
Note to Banders, December 2022
Note to All Banders was a special extra communication with more urgent information relevant to banders. This Note to All Banders was sent to U.S. bird banders on December 20, 2022. This note includes holiday greetings and a review of the 2022 successes at the Bird Banding Laboratory. Throughout 2022, the BBL increased communication, engagement, and collaboration, within the Eastern Ecological Scie
Authors
Antonio Celis-Murillo
Effects of structure and volcanic stratigraphy on groundwater and surface water flow: Hat Creek basin, California, USA
Hydrogeologic systems in the southern Cascade Range in California (USA) develop in volcanic rocks where morphology, stratigraphy, extensional structures, and attendant basin geometry play a central role in groundwater flow paths, groundwater/surface-water interactions, and spring discharge locations. High-volume springs (greater than 3 m3/s) flow from basin-filling (<800 ka) volcanic rocks in the
Authors
Marina Francesca Marcelli, Erick R. Burns, L. J. Patrick Muffler, Andrew J Meigs, Jennifer A. Curtis, Christian E. Torgersen
Disentangling direct and indirect effects of extreme events on coastal wetland communities
One of the primary ways in which climate change will impact coastal freshwater wetlands is through changes in the frequency, intensity, timing and distribution of extreme weather events. Disentangling the direct and indirect mechanisms of population- and community-level responses to extreme events is vital to predicting how species composition of coastal wetlands will change under future condition
Authors
Courtney L. Davis, Susan Walls, William Barichivich, Mary Brown, David A.W. Miller
Habitat utilization, demography, and behavioral observations of the squat lobster, Eumunida picta (Crustacea: Anomura: Eumunididae), on western North Atlantic deep-water coral habitats
Deep-sea coral habitats, comprising mostly Lophelia pertusa (Linnaeus 1758), are well developed on the upper and middle continental slope off the southeastern United States (SEUS). These habitats support a diverse and abundant invertebrate fauna, yet ecology and biology of most of these species are poorly known. Ten cruises conducted off the SEUS (Summer–Fall; Cape Lookout, NC–Cape Canaveral, FL)
Authors
Martha S. Nizinski, Jennifer McClain Counts, Steve W. Ross
Spatial models can improve the experimental design of field-based transplant gardens by preventing bias due to neighborhood crowding
Field-based transplant gardens, including common and reciprocal garden experiments, are a powerful tool for studying genetic variation and gene-by-environment interactions. These experiments assume that individuals within the garden represent independent replicates growing in a homogenous environment. Plant neighborhood interactions are pervasive across plant populations and could violate assumpti
Authors
Andrii Zaiats, Juan M. Requena-Mullor, Matthew Germino, Jennifer S. Forbey, Bryce A. Richardson, T. Trevor Caughlin
Acetylenotrophic and diazotrophic Bradyrhizobium sp. strain I71 from TCE-contaminated soils
AbstractAcetylene (C2H2) is a molecule rarely found in nature, with very few known natural sources, but acetylenotrophic microorganisms can use acetylene as their primary carbon and energy source. As of 2018 there were 15 known strains of aerobic and anaerobic acetylenotrophs; however, we hypothesize there may yet be unrecognized diversity of acetylenotrophs in nature. This study expands the known
Authors
Denise M. Akob, John M. Sutton, Timothy J. Bushman, Shaun Baesman, Edina Klein, Yesha Shrestha, Robert Andrews, Janna L. Fierst, Max Kolton, Sara Gushgari-Doyle, Ronald Oremland, John Freeman
Effects of shading on the rare plant species, Physostegia correllii (Lamiaceae) and Trillium texanum (Melanthiaceae)
Rare plant species that are constrained by shading may be threatened by a lack of natural disturbance that removes overhanging vegetation. The original distribution of the study species Physostegia correllii (Lundell) Shinners included freshwater floodplains of large rivers in the southcentral U.S. (Colorado, Rio Grande, and Mississippi rivers). A second species, Trillium texanum Buckley was found
Authors
Beth Middleton, Casey R. Williams, Chris Doffitt, Darren Johnson