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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41764

A multi-level assessment of biological effects associated with mercury concentrations in smallmouth bass, Micropterus dolomieu

Total mercury (THg) was measured in muscle (fillet) and liver tissue of adult smallmouth bass Micropterus dolomieu collected at multiple sites in the Potomac and Susquehanna River drainages within the Chesapeake Bay watershed. Smallmouth bass in these drainages have experienced episodic mortality events, a high prevalence of skin lesions and reproductive endocrine disruption (intersex or testicula
Authors
Vicki S. Blazer, Heather L. Walsh, Adam Sperry, Brenna Raines, James Willacker, Collin Eagles-Smith

First investigations on lamprey responses to elevated total dissolved gas exposure and risk of gas bubble trauma

A flexible spill program in the federal Columbia River power system increased the total dissolved gas (TDG) water quality standards (i.e., the gas cap) from 120% to 125%. Spill is used to pass juvenile salmon (Oncorhynchus spp.) over dams, but it can generate elevated TDG, and exposed fish can develop gas bubble trauma (GBT) or experience mortality. Juvenile salmon are monitored for GBT through th
Authors
Theresa L. Liedtke, Kenneth Tiffan, Lisa K. Weiland, Brian K. Ekstrom

U.S. Geological Survey invasive carp strategic framework, 2023–27

U.S. Geological Survey (USGS) research has supported management of Hypophthalmichthys nobilis (bighead carp), Mylopharyngodon piceus (black carp), Ctenopharyngodon idella (grass carp), and H. molitrix (silver carp), hereafter referred to collectively as invasive carps, for over a decade. This strategic framework identifies thematic research areas to guide funding decisions for USGS invasive carp r
Authors
Duane Chapman, Jon Amberg, Robin Calfee, Enrika Hlavacek, Jon Hortness, P. Ryan Jackson, David C. Kazyak, Brent Knights, James Roberts

U.S. Geological Survey science to support wildlife disease management

Introduction The U.S. Geological Survey (USGS) serves a principal role in conducting wildlife disease outbreak investigations, surveillance, and ecological research to support management of diseases in free-ranging native wildlife. Approximately 60 percent of emerging human infectious diseases such as COVID-19, are zoonotic, meaning they are transmitted between animals and humans and 70 percent of
Authors
M. Camille Hopkins, Suzanna C. Soileau

Simulating the migration dynamics of juvenile salmonids through rivers and estuaries using a hydrodynamically driven enhanced particle tracking model

Juvenile salmonids migrate hundreds of kilometers from their natal streams to mature in the ocean. Throughout this migration, they respond to environmental cues such as local water velocities and other stimuli to direct and modulate their movements, often through heavily modified riverine and estuarine habitats. Management strategies in an uncertain future of climate change and altered land use re
Authors
Vamsi Krishna Sridharan, Doug Jackson, Andrew M. Hein, Russell Perry, Adam Pope, Noble Hendrix, Eric M. Danner, Steven T. Lindley

The changing dynamics of highly pathogenic avian influenza H5N1: Next steps for management & science in North America

Highly pathogenic avian influenza virus (HPAIV) H5N1 was introduced in North America in late 2021 through trans-Atlantic pathways via migratory birds. These introductions have resulted in an unprecedented epizootic, a widespread disease event in animals, heavily affecting poultry, wild birds, and recently mammals. The North American incursions occurred during the largest epidemic season (2021–2022
Authors
Johanna Harvey, Jennifer M. Mullinax, Michael C. Runge, Diann Prosser

Nitrogen-bedrock interactions regulate multi-element nutrient limitation and sustainability in forests

Nutrient limitation of tree growth can intensify when nutrients are lost to forest harvest, creating challenges for forest growth and sustainability. Forest harvest accelerates nutrient loss by removing nutrient-containing biomass and by increasing nutrient leaching, shaping patterns of nutrient depletion that cause long-term shifts in nutrient limitation. Nitrogen most frequently limits tree grow
Authors
Kaveh G. Siah, Steven Perakis, Julie C. Pett-Ridge, Gregory van der Heijden

Potential effects of habitat change on migratory bird movements and avian influenza transmission in the East Asian-Australasian Flyway

Wild waterbirds, and especially wild waterfowl, are considered to be a reservoir for avian influenza viruses, with transmission likely occurring at the agricultural-wildlife interface. In the past few decades, avian influenza has repeatedly emerged in China along the East Asian-Australasian Flyway (EAAF), where extensive habitat conversion has occurred. Rapid environmental changes in the EAAF, esp
Authors
John Takekawa, Diann Prosser, Jeffery D. Sullivan, Shenglai Yin, Xinxin Wang, Geli Zhang, Xiangming Xiao

Trends, impacts, and cost of catastrophic and frequent wildfires in the sagebrush biome

Fire regimes in sagebrush (Artemisia spp.) ecosystems have been greatly altered across the western United States. Broad-scale invasion of non-native annual grasses, climate change, and human activities have accelerated wildfire cycles, increased fire size and severity, and lengthened fire seasons in many sagebrush ecosystems to the point that current wildfire-management practices and postfire rest
Authors
Michele R. Crist, Rick Belger, Kirk W. Davies, Dawn M. Davis, James Meldrum, Douglas J. Shinneman, Thomas E. Remington, Justin L. Welty, Kenneth E. Mayer

A cross inoculation experiment reveals Ophidiomyces ophiodiicola and Nannizziopsis guarroi can each infect both snakes and lizards

Host range and specificity are key concepts in the study of infectious diseases. However, both concepts remain largely undefined for many influential pathogens, including many fungi within the Onygenales order. This order encompasses reptile-infecting genera (Nannizziopsis, Ophidiomyces, and Paranannizziopsis) formerly classified as the Chrysosporium anamorph of Nannizziopsis vriesii (CANV). The r
Authors
Savannah L Gentry, Jeffrey M. Lorch, Julia S. Lankton, Anne Pringle

Climate change and pulse migration: Intermittent Chugach Inuit occupation of glacial fiords on the Kenai Coast, Alaska

For millennia, Inuit peoples of the Arctic and Subarctic have been challenged by the impacts of climate change on the abundance of key subsistence species. Responses to climate-induced declines in animal populations included switching to alternative food sources and/or migrating to regions of greater availability. We examine these dynamics for the Chugach Inuit (Sugpiat) people of southern coastal
Authors
Aron Crowell, Mayumi L. Arimitsu

Challenges and solutions for automated avian recognition in aerial imagery

Remote aerial sensing provides a non-invasive, large geographical-scale technology for avian monitoring, but the manual processing of images limits its development and applications. Artificial Intelligence (AI) methods can be used to mitigate this manual image processing requirement. The implementation of AI methods, however, has several challenges: (1) imbalanced (i.e., long-tailed) data distribu
Authors
Zhonqgi Miao, Stella X Yu, Kyle Lawrence Landolt, Mark D. Koneff, Timothy White, Luke J. Fara, Enrika Hlavacek, Bradley A. Pickens, Travis J. Harrison, Wayne M. Getz