Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42177
Factors influencing egg thiamine concentrations of Lake Ontario lake trout: 2019–2020
In the Great Lakes region, thiamine deficiency is considered a recruitment bottleneck for lake trout Salvelinus namaycush and has been correlated with the consumption of non-native alewife Alosa pseudoharengus. While alewife, the most abundant forage fish in Lake Ontario, are the predominant prey for lake trout, they also consume benthic prey such as round goby Neogobius melanostomus...
Authors
Aaron C. Heisey, Christopher Osborne, Brian F. Lantry, Donald E. Tillitt, Jacques Rinchard
Assessment of potential recovery viability for Colorado Pikeminnow Ptychocheilus lucius in the Colorado River in Grand Canyon
Colorado Pikeminnow Ptychocheilus lucius, the Colorado River’s top native predatory fish, was historically distributed from the Gulf of California delta to the upper reaches of the Green, Colorado, and San Juan rivers in the Colorado River basin in the Southwestern US. In recent decades Colorado Pikeminnow population abundance has declined, primarily due to predation by warmwater...
Authors
Kimberley Dibble, Charles B. Yackulic, Kevin R. Bestgen, Keith B. Gido, Tildon Jones, Mark C. McKinstry, Doug Osmundson, Dale Ryden, Robert C. Schelly
Marmots do not drink coffee: Human urine contributions to the nitrogen budget of a popular national park destination
Reactive nitrogen (Nr) concentrations are higher than expected for mountain lakes in Rocky Mountain National Park, and for many years, high Nr concentrations have been attributed to atmospheric Nr deposition from regional and more distant emission sources, including combustion of fossil fuels and agricultural activities. Here, we estimated the contribution from a very local source, that...
Authors
Jill Baron, Timothy Weinmann, Varun Kirk Acharya, Caitlin Charlton, Koren R. Nydick, Scott M. Esser
Management of vampire bats and rabies: Past, present, and future
Rabies virus transmitted via the bite of common vampire bats (Desmodus rotundus) has surpassed canine-associated cases as the predominant cause of human rabies in Latin America. Cattle, the preferred prey of D. rotundus, suffer extensive mortality from vampire bat associated rabies, with annual financial losses estimated in the tens of millions of dollars. Organized attempts to manage or...
Authors
Tonie E. Rocke, Daniel G. Streicker, Ariel Elizabeth Leon
The concept of land bridge marshes in the Mississippi River Delta and implications for coastal restoration
Louisiana has high coastal wetland loss rates due to natural processes such as subsidence and anthropogenic activities such as construction of river levees and dams, pervasive alteration of surface hydrology by local industries such as oil and gas, and navigation. With the exception of the Atchafalaya River discharge area, most of Louisiana's marsh coastline is retreating and coastal...
Authors
John W. Jr. Day, Robert R. Twilley, Angelina M. Freeman, Brady Couvillion, Tracy Quirk, Nahid Jafari, Giulio Mariotti, Rachael Hunter, Charles Norman, G. Paul Kemp, John R. White, Ehab A. Meselhe
Inland water greenhouse gas budgets for RECCAP2: 2. Regionalization and homogenization of estimates
Inland waters are important sources of the greenhouse gasses (GHGs) carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O) to the atmosphere. In the framework of the 2nd phase of the REgional Carbon Cycle Assessment and Processes (RECCAP-2) initiative, we synthesize existing estimates of GHG emissions from streams, rivers, lakes and reservoirs, and homogenize them with regard to...
Authors
Ronny Lauerwald, George Allen, Bridget Deemer, Shaoda Liu, Taylor Maavara, Peter A. Raymond, Lewis Alcott, David Bastviken, Adam Hastie, Meredith A. Holgerson, Matthew S. Johnson, Bernhard Lehner, Peirong Lin, Alessandra Marzadri, Lishan Ran, Hanqin Tian, Xiao Yang, Yuanzhi Yao, Pierre Regnier
Inland water greenhouse gas budgets for RECCAP2: 1. State-of-the-art of global scale assessments
Inland waters are important sources of the greenhouse gasses (GHGs) carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O) to the atmosphere. In the framework of the 2nd phase of the REgional Carbon Cycle Assessment and Processes (RECCAP-2) initiative, we review the state of the art in estimating inland water GHG budgets at global scale, which has substantially advanced since the...
Authors
Ronny Lauerwald, George Allen, Bridget Deemer, Shaoda Liu, Taylor Maavara, Peter A. Raymond, Lewis Alcott, David Bastviken, Adam Hastie, Meredith A. Holgerson, Matthew S. Johnson, Bernhard Lehner, Peirong Lin, Alessandra Marzadri, Lishan Ran, Hanqin Tian, Xiao Yang, Yuanzhi Yao, Pierre Regnier
Distribution and abundance of Southwestern Willow Flycatchers (Empidonax traillii extimus) on the upper San Luis Rey River, San Diego County, California—2022 data summary
Executive SummaryWe surveyed for Southwestern Willow Flycatchers (Empidonax traillii extimus; flycatcher) along the upper San Luis Rey River near Lake Henshaw in Santa Ysabel, California, in 2022. Surveys were completed at four locations: three downstream from Lake Henshaw, where surveys occurred from 2015 to 2021 (Rey River Ranch [RRR], Cleveland National Forest [CNF], Vista Irrigation...
Authors
Scarlett L. Howell, Barbara Kus
Ambrosia beetles (Coleoptera: Curculionidae) can directly transmit the fungal pathogens responsible for Rapid ʻŌhiʻa Death
The ecologically and culturally vital tree species, ʻōhiʻa lehua (Metrosideros polymorpha), is threatened by the fungal pathogens Ceratocystis lukuohia and Ceratocystis huliohia, the causal agents of the disease complex called Rapid ʻŌhiʻa Death (ROD). Four invasive ambrosia beetle (Coleoptera: Curculionidae: Scolytinae) species in the Xyleborini tribe colonize ROD Ceratocystis-infested...
Authors
Kylle Roy, Kelly Jaenecke, Ellen Dunkle, Dan Mikros, Robert W. Peck
A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida)
The proliferation of genomic sequencing approaches has significantly impacted the field of phylogenetics. Target capture approaches provide a cost-effective, fast and easily applied strategy for phylogenetic inference of non-model organisms. However, several existing target capture processing pipelines are incapable of incorporating whole genome sequencing (WGS). Here, we develop a new...
Authors
Andre Gomes-dos-Santos, Elsa Froufe, John M. Pfeiffer, Nathan Johnson, Chase H. Smith, André M. Machado, L. Filipe C. Castro, Van Tu Do, Akimasa Hattori, Nicole Garrison, Nathan V. Whelan, Ivan N. Bolotov, Ilya V. Vikhrev, Alexander V. Kondakov, Mohamed Ghamizi, Vincent Prié, Arthur E. Bogan, Manuel Lopes Lima
Exploring the relevance of the multidimensionality of wildlife recreationists to conservation behaviors: A case study in Virginia
Wildlife recreationists' participation in conservation behaviors could provide key support to the conservation efforts of state fish and wildlife agencies. However, little is known about how identifying with multiple forms of wildlife recreation (i.e., hunters, anglers, birders, wildlife viewers) may influence participation in conservation behaviors, specifically for supporting state...
Authors
Bennett Grooms, Ashley A. Dayer, Jessica Barnes, Ashley Peele, Jonathan D. Rutter, Nicholas Cole
Estimating the impact of climate and vegetation changes on runoff risk across the Hawaiian landscape
In Hawai’i, ecosystem conservation practitioners are increasingly considering the potential ecohydrological benefits from applied conservation action to mitigate the degrading impacts of runoff on native and restored ecosystems. One determinant of runoff is excess rainfall events where rainfall rates exceed the infiltration capacity of soils. To help understand runoff risks, we...
Authors
Lucas Fortini, Lauren R. Kaiser, Kimberlie Perkins, Lulin Xue, Yaping Wang