Software

Two complementary executable water-quality modeling tools (CausticTitration_PO4mg.exe, CausticTitration_PO4moles.exe) simulate equilibrium processes that may attenuate dissolved concentrations of phosphate (PO4) plus associated concentrations of iron (Fe), aluminum (Al), manganese (Mn), calcium (Ca), and sulfate (SO4) as pH and other solution characteristics change during titration with a caustic

Projects and apps to support computation of stream discharge using remotely-sensed satellite data. (RSQ, Remotely Sensed Discharge): altimDSWE: Shiny app tool to support development of relations between satellite altimetry and DSWE data RSQcomp: Shiny app tool for computing stream discharge using remotely sensed data

The repository contains code to analyze the differences in model results when nested design structures differ. The code for this project assumes the reader is familiar with R, nested designs, and mixed effects linear modeling.

occStan is an R package (R Core Team 2021) providing a collection of occpuancy Bayesian models written in the Stan language as called through RStan (Stan Development Team 2021). The package is a USGS software software release. The purpose of the package is to document these models for use in USGS projects and allow easy discrimination. The package assumes the user is familiar with R and occupancy

This DOI points to the code repository for codes used in David C. Wilson, Emily Wolin, William L. Yeck, Robert E. Anthony, Adam T. Ringler; Modeling Seismic Network Detection Thresholds Using Production Picking Algorithms. Seismological Research Letters 2021; 93 1: doi: https://doi.org/10.1785/0220210192

Geologic slip rates are a time-averaged measurement of fault displacement calculated over 100s- to 1,000,000-year time scales and are a primary input for probabilistic seismic hazard analyses (PSHA), which forecast expected ground shaking in future earthquakes. Despite their utility for seismic hazard calculations, longer-term geologic slip rates represent a time-averaged measure of the tempo of s

We have developed a new three-dimensional seismic velocity model of the central United States (CUSVM) that includes the New Madrid Seismic Zone (NMSZ) and covers parts of Arkansas, Mississippi, Alabama, Illinois, Missouri, Kentucky, and Tennessee (Ramirez Guzman et al, 2012). The model represents a compilation of decades of crustal research consisting of seismic, aeromagnetic, and gravity profiles

This project contains the C# software developed to control and acquire imagery from a FLIR GigE machine vision camera. It is built using the FLIR Spinnaker 64bit SDK version 2.4.0.144 and requires the spinview application and associated dll's. This software was developed using Microsoft Visual Studio 2019 to control and acquire imagery from a GigE machine vision camera (Model: BFS-PGE-50S5C-C, t

Matching climate envelopes of allows people to examine how potential invasive species may match habitats. The Australian government created Climatch to do allow for these comparisons. However, this webpage does not allow for readily scripting climate matching. Hence, the authors created climatchR, an R package (R Core Team 2020) implementing the climatch method in R. This was created to allow auto

The Dam Removal Information Portal (DRIP) contains information about the geographic locations of dam removals and any associated scientific studies evaluating outcomes to physical, biological, and water quality parameters. This application uses Python DASH to help distribute and visualize information from the Dam Removal Information Portal API (DRIP API).

This repository holds the code to reproduce the data analyses and figures found in "Differences in Rhizosphere Microbial Communities Between Native and Non-Native Phragmites australis May Depend on Stand Density" published in Ecology and Evolution written by Wesley A. Bickford, Donald R. Zak, Kurt P. Kowalski, and Deborah E. Goldberg.