Software

This software code was developed to estimate the probability that individuals found at a geographic location will belong to the same genetic cluster as individuals at the nearest empirical sampling location for which ancestry is known. POPMAPS includes 5 main functions to calculate and visualize these results (see Table 1 for functions and arguments). Population assignment coefficients and a raste

SolVES is a tool for modeling and mapping social survey response data in relation to explanatory environmental variables. SolVES 4.0 was developed as open-source software with Python and uses the free software packages QGIS for its user interface and PostgreSQL spatially enabled by PostGIS for its source database. Updates to the previous version include minor changes to the source database and use

This software archive is superseded by Hydrologic Toolbox v1.1.0, available at the following citation: Barlow, P.M., McHugh, A.R., Kiang, J.E., Zhai, T., Hummel, P., Duda, P., and Hinz, S., 2024, U.S. Geological Survey Hydrologic Toolbox version 1.1.0 software archive: U.S. Geological Survey software release, https://doi.org/10.5066/P13VDNAK. The U.S. Geological Survey Hydrologic Toolbox is a Wind

USGS BiblioSearch is a python tool that performs literature searches across multiple citation databases via APIs or other web services in Python. The tool provides a quick method to query keywords and clean and compile results. Currently, the software includes methods to search four databases - Clarivate Web of Science, Elsevier Scopus, USGS Publications Warehouse, and USGS ScienceBase.

Tools for interacting with U.S. Geological Survey ScienceBase https://www.sciencebase.gov interfaces. ScienceBase is a data cataloging and collaborative data management platform. Functions included for querying ScienceBase, and creating and fetching datasets.

The covMRVAgen1 repository contains R (primarily), Mermaid, Perl, and Python language source code that can be used the construction of input tables of monthly groundwater levels (response variable) and predictor variables (covariates) for statistical modeling of water levels in the Mississippi River Valley alluvial aquifer within the Mississippi Alluvial Plain, south-central United States. The sou

National Seismic Hazard Model (NSHM) for the conterminous U.S. This model is intended for use with U.S. Geological Survey (USGS) hazard software nshmp-haz. This model was last updated in 2018.

National Seismic Hazard Model (NSHM) for the State of Hawaii. This model is intended for use with U.S. Geological Survey (USGS) hazard software nshmp-haz.

U.S. Geological Survey (USGS) National Seismic Hazard Model Project (NSHMP) codes for performing probabilistic seismic hazard (PSHA) and related analyses. These codes are intended for use with seismic hazard models developed by the NSHMP for the U.S. and its territories. This project includes a variety of command line applications and web service classes and relies on the nshmp-lib hazard library,

nshmp-lib is a USGS developed Java library that supports probabilistic seismic hazard (PSHA) and related analyses. This project includes all the code required to load, process and query USGS National Seismic Hazard Models (NSHMs). nshmp-lib is used by command line applications and web services found in the nshmp-haz project. See that project for running PSHA calculations.

R-based script used to simulate patterns of co-occurrence among two hypothetical species under patterns of avoidance, aggregation, and independence when the closure assumption is met or not, analyze simulated patterns with two-species occupancy models, and summarize the results.