Software

R code and .stan files for fitting physiologically guided abundance models for predicting climate change impacts on poikilotherms.

The Mercury Condition Index Tool uses existing data of mercury concentrations in invertebrates, fish, and birds within national parks to estimate a park level Condition Index (and associated uncertainty) for mercury, based on its potential risk to fish and wildlife health. The tool employs a series of logic steps to convert provided data into standardized units, based upon both basic stoichiometr

Software utilizing PHREEQC with user interface. The PHREEQ-N-AMDTreat+REYs geochemical modeling tools have the fundamental capability to simulate and predict key reactions related to the treatment of acid mine drainage and the formation of treatment solids, including the adsorption of rare-earth elements plus yttrium (REYs) onto hydrous iron, aluminum, and manganese oxides. These new tools were e

This package provides functions and workflows for standardizing geophysical datasets based on the NetCDF file format. The current implementation supports both time and frequency domain electromagnetic data, raw and processed, 1-D inverted models along flight lines, and 2-D/3-D gridded layers.

The abundance of wildlife occurrence datasets that are currently accessible can be valuable for efforts such as species distribution modeling and range delineation. However, the task of downloading and filtering occurrence records is often complex due to errors and uncertainties that are present in datasets. This repository provides a high-level framework for acquiring and filtering occurrence dat

Decisions related to controversial problems in natural resource management receive the greatest support when they account for multiple objectives of stakeholders in a structured and transparent fashion. In the United States, management of feral horses (Equus caballus) is a controversial multi-objective problem because disparate stakeholder groups have varying objectives and opinions about how to m

Abstraction Layer for Ephemerides version 0.9.0

Abstraction Layer for Ephemeride version 0.8.7

The Science-based Management of Ravens Tool (SMaRT) supports a science-based adaptive management framework that incorporates recent quantitative analyses and mapping products for addressing areas with elevated common raven (Corvus corax) numbers and minimizing potential adverse impacts to sensitive species, agricultural damage, and human safety (Dettenmaier et al. 2021). This is a web-based applic

Code files "growth_analysis.R" -An R script to fit the von Bertalanffy growth model to growth data from San Francisco gartersnakes. The von Bertalanffy growth model is fit using JAGS software (Plummer 2003), and is based on the model presented in Armstrong and Brooks (2013). "survival_analysis.R" -An R script to fit the robust-design Cormack-Jolly-Seber model to capture-mark-recapture data from

poscrptR is a simple R package with the sole purpose of distributing a shiny app for predicting post-fire conifer regeneration. Learn more about shiny apps here.

The Groundwater/Surface-Water Method Selection Tool (GW/SW-MST) is a spreadsheet-based tool to help practitioners identify methods for use in groundwater/surface-water (GW/SW) exchange and hyporheic studies. GW/SW exchange and hyporheic processes are topics receiving increasing attention from the hydrologic community. Hydraulic, chemical, temperature, geophysical, and remote sensing methods are u