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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

A comparison of passive and active acoustic sampling for a bat community impacted by White-nose syndrome

In the summers of 2011 and 2012, we compared passive and active acoustic sampling for bats at 31 sites at Fort Drum Military Installation, New York. We defined active sampling as acoustic sampling that occurred in 30-min intervals between the hours of sunset and 0200 with a user present to manipulate the directionality of the microphone. We defined passive sampling as acoustic sampling that occurr
Authors
Laci S. Coleman, W. Mark Ford, Christopher A. Dobony, Eric R. Britzke

Mark-resight abundance estimation under incomplete identification of marked individuals

Often less expensive and less invasive than conventional mark–recapture, so-called 'mark-resight' methods are popular in the estimation of population abundance. These methods are most often applied when a subset of the population of interest is marked (naturally or artificially), and non-invasive sighting data can be simultaneously collected for both marked and unmarked individuals. However, it ca
Authors
Brett T. McClintock, Jason M. Hill, Lowell Fritz, Kathryn Chumbley, Katie Luxa, Duane R. Diefenbach

Comprehensive framework for ecological assessment of the Migratory Bird Habitat Initiative following the Deepwater Horizon oil spill

Following the Deepwater Horizon oil spill in the Gulf of Mexico in April 2010, the USDA Natural Resources Conservation Service (NRCS) established and funded the Migratory Bird Habitat Initiative (MBHI), with the goal of improving and increasing wetland habitats on private lands to benefit wintering and migrating waterbirds displaced from oil-impacted coastal wetlands. The NRCS and conservation par
Authors
J. Brian Davis, Elisabeth B. Webb, Richard M. Kaminski, Philip J. Barbour, Francisco Vilella

Hidden Markov model for dependent mark loss and survival estimation

Mark-recapture estimators assume no loss of marks to provide unbiased estimates of population parameters. We describe a hidden Markov model (HMM) framework that integrates a mark loss model with a Cormack–Jolly–Seber model for survival estimation. Mark loss can be estimated with single-marked animals as long as a sub-sample of animals has a permanent mark. Double-marking provides an estimate of ma
Authors
Jeffrey L. Laake, Devin S. Johnson, Duane R. Diefenbach, Mark A. Ternent

Population dynamics modeling of introduced smallmouth bass in the upper Colorado River basin

The purpose of these analyses was to identify an effective control strategy to further reduce smallmouth bass in the upper Colorado River basin from the current level. Our simulation results showed that “the surge”, an early to mid-summer increase in electrofishing effort targeting nest-guarding male smallmouth bass, should be made a core component of any future smallmouth bass management strategy
Authors
André R. Breton, Dana L. Winkelman, Kevin R. Bestgen, John A. Hawkins

Assessing and managing freshwater ecosystems vulnerable to global change

Freshwater ecosystems are important for global biodiversity and provide essential ecosystem services. There is consensus in the scientific literature that freshwater ecosystems are vulnerable to the impacts of environmental change, which may trigger irreversible regime shifts upon which biodiversity and ecosystem services may be lost. There are profound uncertainties regarding the management and a
Authors
David G. Angeler, Craig R. Allen, Hannah E. Birge, Stina Drakare, Brendan G. McKie, Richard K. Johnson

Fitness in animals correlates with proximity to discontinuities in body mass distributions.

Discontinuous structure in landscapes may cause discontinuous, aggregated species body-mass patterns, reflecting the scales of structure available to animal communities within a landscape. Empirical analyses have shown that the location of species within body mass aggregations, which reflect this scale-specific organization, is non-random with regard to several ecological phenomena, including spec
Authors
David G. Angeler, Craig R. Allen, Anna Vila-Gispert, David Almeida

Monitoring fish distributions along electrofishing segments

Electrofishing is widely used to monitor fish species composition and relative abundance in streams and lakes. According to standard protocols, multiple segments are selected in a body of water to monitor population relative abundance as the ratio of total catch to total sampling effort. The standard protocol provides an assessment of fish distribution at a macrohabitat scale among segments, but n
Authors
Leandro E. Miranda

Impacts of drought and crayfish invasion on stream ecosystem structure and function

Drought and seasonal drying can be important disturbance events in many small streams, leading to intermittent or isolated habitats. Many small streams contain crayfish populations that are often keystone or dominant species in these systems. I conducted an experiment in stream mesocosms to examine the effects of drought and potential ecological redundancy of a native and invasive crayfish species
Authors
Daniel D. Magoulick

Response of plant community structure and primary productivity to experimental drought and flooding in an Alaskan fen

Northern peatlands represent a long-term net sink for atmospheric CO2, but these ecosystems can shift from net carbon (C) sinks to sources based on changing climate and environmental conditions. In particular, changes in water availability associated with climate control peatland vegetation and carbon uptake processes. We examined the influence of changing hydrology on plant species abundance and
Authors
A.C. Churchill, Merritt R. Turetsky, A. David McGuire, Teresa N. Hollingsworth

Evaluating changes in stream fish species richness over a 50-year time-period within a landscape context

Worldwide, streams and rivers are facing a suite of pressures that alter water quality and degrade physical habitat, both of which can lead to changes in the composition and richness of fish populations. These potential changes are of particular importance in the Southeast USA, home to one of the richest stream fish assemblages in North America. Using data from 83 stream sites in North Carolina sa
Authors
Stephen R. Midway, Tyler Wagner, Bryn H. Tracy, Gabriela M. Hogue, Wayne C. Starnes

Pesticide concentrations in frog tissue and wetland habitats in alandscape dominated by agriculture

Habitat loss and exposure to pesticides are likely primary factors contributing to amphibian decline in agricultural landscapes. Conservation efforts have attempted to restore wetlands lost through landscape modifications to reduce contaminant loads in surface waters and providing quality habitat to wildlife. The benefits of this increased wetland area, perhaps especially for amphibians, may be ne
Authors
Kelly L. Smalling, Rebecca Reeves, Erin L. Muths, Mark W. Vandever, William A. Battaglin, Michelle Hladik, Clay L. Pierce