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Fish and Aquatic Species Publications

Looking for publications related to fish and aquatic species? Browse the list below or use the search box to narrow the results.

Filter Total Items: 322

Migratory behavior of adult sea lamprey and cumulative passage performance through four fishways

This article describes a study of PIT-tagged sea lamprey (Petromyzon marinus) ascending four fishways comprising three designs at two dams on the Connecticut River, USA. Migration between dams was rapid (median migration rate = 23 km·day−1). Movement through the fishways was much slower, however (median = 0.02–0.33 km·day−1). Overall delay at dams was substantial (median = 13.6–14.6 days); many fi
Authors
Theodore R. Castro-Santos, Xiaotao Shi, Alexander Haro

Optimization of a Plaque Neutralization Test (PNT) to identify the exposure history of Pacific Herring to viral hemorrhagic septicemia virus (VHSV)

Methods for a plaque neutralization test (PNT) were optimized for the detection and quantification of viral hemorrhagic septicemia virus (VHSV) neutralizing activity in the plasma of Pacific Herring Clupea pallasii. The PNT was complement dependent, as neutralizing activity was attenuated by heat inactivation; further, neutralizing activity was mostly restored by the addition of exogenous compleme
Authors
Lucas Hart, Ashley MacKenzie, Maureen K. Purcell, Rachel L. Thompson, Paul Hershberger

Pufferfish mortality associated with novel polar marine toxins in Hawaii

Fish die-offs are important signals in tropical marine ecosystems. In 2010, a mass mortality of pufferfish in Hawaii (USA) was dominated by Arothron hispidus showing aberrant neurological behaviors. Using pathology, toxinology, and field surveys, we implicated a series of novel, polar, marine toxins as a likely cause of this mass mortality. Our findings are striking in that (1) a marine toxin was
Authors
Thierry M. Work, Perer D. R. Moeller, Kevin R. Beauchesne, Julie Dagenais, Renee Breeden, Robert Rameyer, Willliam A. Walsh, Melanie Abecassis, Donald R. Kobayashi, Carla M. Conway, James Winton

Wind River Subbasin Restoration, annual report of U.S. Geological Survey activities: Parr monitoring and instream passive integrated transponder detection, January 1, 2015 – December 31, 2015

We used Passive Integrated Transponder (PIT)-tagging and a series of instream PIT-tag interrogation systems (PTIS) to investigate life-histories, populations, and efficacy of habitat restoration actions for steelhead Oncorhynchus mykiss in the Wind River subbasin, WA. Our tagging focused on parr in headwater areas of the subbasin and our PTISs provide information on movement of these parr, which i
Authors
Ian Jezorek, Patrick Connolly

Status and trends of dam removal research in the United States

Aging infrastructure coupled with growing interest in river restoration has driven a dramatic increase in the practice of dam removal. With this increase, there has been a proliferation of studies that assess the physical and ecological responses of rivers to these removals. As more dams are considered for removal, scientific information from these dam-removal studies will increasingly be called u
Authors
James Bellmore, Jeffrey J. Duda, Laura Craig, Samantha L. Greene, Christian E. Torgersen, Mathias J. Collins, Katherine Vittum

Effects of carbon dioxide on juveniles of the freshwater mussel (Lampsilis siliquoidea [Unionidae])

Carbon dioxide (CO2) has shown promise as a tool to control movements of invasive Asian carp, but its effects on native freshwater biota have not been well studied. The authors evaluated lethal and sublethal responses of juvenile fatmucket (Lampsilis siliquoidea) mussels to CO2 at levels (43–269 mg/L, mean concentration) that bracket concentrations effective for deterring carp movement. The 28-d l
Authors
Diane L. Waller, Michelle R. Bartsch, Kim T. Fredricks, Lynn A. Bartsch, Susan M. Schleis, Sheldon Lee

Electrical guidance efficiency of downstream-migrating juvenile Sea Lamprey decreases with increasing water velocity

We tested the efficacy of a vertically oriented field of pulsed direct current (VEPDC) created by an array of vertical electrodes for guiding downstream-moving juvenile Sea Lampreys Petromyzon marinus to a bypass channel in an artificial flume at water velocities of 10–50 cm/s. Sea Lampreys were more likely to be captured in the bypass channel than in other sections of the flume regardless of elec
Authors
Scott M. Miehls, Nicholas S. Johnson, Alexander Haro

Long-term fish monitoring in large rivers: Utility of “benchmarking” across basins

In business, benchmarking is a widely used practice of comparing your own business processes to those of other comparable companies and incorporating identified best practices to improve performance. Biologists and resource managers designing and conducting monitoring programs for fish in large river systems tend to focus on single river basins or segments of large rivers, missing opportunities to
Authors
David L. Ward, Andrew F. Casper, Timothy D. Counihan, Jennifer M. Bayer, Ian R. Waite, John J. Kosovich, Colin Chapman, Elise R. Irwin, Jennifer S. Sauer, Brian Ickes, Alexa McKerrow

Molecular characterization of a novel orthomyxovirus from rainbow and steelhead trout (Oncorhynchus mykiss)

A novel virus, rainbow trout orthomyxovirus (RbtOV), was isolated in 1997 and again in 2000 from commercially-reared rainbow trout (Oncorhynchus mykiss) in Idaho, USA. The virus grew optimally in the CHSE-214 cell line at 15°C producing a diffuse cytopathic effect; however, juvenile rainbow trout exposed to cell culture-grown virus showed no mortality or gross pathology. Electron microscopy of pre
Authors
William N. Batts, Scott E. LaPatra, Ryan Katona, Eric Leis, Terry Fei Fan Ng, Marine S.O. Bruieuc, Rachel Breyta, Maureen K. Purcell, Thomas B. Waltzek, Eric Delwart, James Winton

Trophic interactions and consumption rates of subyearling Chinook Salmon and nonnative juvenile American Shad in Columbia River reservoirs

We used a large lampara seine coupled with nonlethal gastric lavage to examine the diets and estimate consumption rates of subyearling Chinook Salmon Oncorhynchus tshawytscha during July and August 2013. During August we also examined the diet and consumption rates of juvenile American Shad Alosa sapidissima, a potential competitor of subyearling Chinook Salmon. Subyearling Chinook Salmon consumed
Authors
Craig A. Haskell, David A. Beauchamp, Stephen M Bollins

Detecting Renibacterium salmoninarum in wild brown trout by use of multiple organ samples and diagnostic methods

Renibacterium salmoninarum, the causative agent of salmonid bacterial kidney disease (BKD), is endemic in many wild trout species in northerly regions. The aim of the present study was to determine the optimal R. salmoninarum sampling/testing strategy for wild brown trout (Salmo trutta L.) populations in Iceland. Fish were netted in a lake and multiple organs—kidney, spleen, gills, oesophagus and
Authors
S. Guomundsdottir, Lynn M. Applegate, I.O. Arnason, A. Kristmundsson, Maureen K. Purcell, Diane G. Elliott

Inhibition of an aquatic rhabdovirus demonstrates promise of a broad-spectrum antiviral for use in aquaculture

Many enveloped viruses cause devastating disease in aquaculture, resulting in significant economic impact. LJ001 is a broad-spectrum antiviral compound that inhibits enveloped virus infections by specifically targeting phospholipids in the lipid bilayer via the production of singlet oxygen (1O2). This stabilizes positive curvature and decreases membrane fluidity, which inhibits virus-cell membrane
Authors
Bethany F. Balmer, Rachel L. Powers, Ting-Hu Zhang, Jihye Lee, Frederic Vigant, Benhur Lee, Michael E. Jung, Maureen K. Purcell, Kevin Snekvik, Hector C. Aguilar

Potential distribution of the viral haemorrhagic septicaemia virus in the Great Lakes region

Viral haemorrhagic septicaemia virus (VHSV) genotype IVb has been responsible for large-scale fish mortality events in the Great Lakes of North America. Anticipating the areas of potential VHSV occurrence is key to designing epidemiological surveillance and disease prevention strategies in the Great Lakes basin. We explored the environmental features that could shape the distribution of VHSV, base
Authors
Luis E. Escobar, Gael Kurath, Joaquim Escobar-Dodero, Meggan E. Craft, Nicholas B.D. Phelps

Preliminary evaluation of the behavior and movements of adult spring Chinook salmon in the Chehalis River, southwestern Washington, 2014

Recent interest in flood control and restoration strategies in the Chehalis River Basin has increased the need to understand the current status and ecology of spring Chinook salmon (Oncorhynchus tshawytscha). Spring Chinook salmon have the longest exposure of all adult Chinook salmon life histories to the low-flow and high water temperature conditions that typically occur during summer. About 100
Authors
Theresa L. Liedtke, William R. Hurst, Ryan G. Tomka, Tobias J. Kock, Mara S. Zimmerman

Replication and shedding kinetics of infectious hematopoietic necrosis virus in juvenile rainbow trout

Viral replication and shedding are key components of transmission and fitness, the kinetics of which are heavily dependent on virus, host, and environmental factors. To date, no studies have quantified the shedding kinetics of infectious hematopoietic necrosis virus (IHNV) in rainbow trout (Oncorhynchus mykiss), or how they are associated with replication, making it difficult to ascertain the tran
Authors
Andrew R. Wargo, Robert J. Scott, Benjamin Kerr, Gael Kurath

The family Rhabdoviridae: Mono- and bipartite negative-sense RNA viruses with diverse genome organization and common evolutionary origins

The family Rhabdoviridae consists of mostly enveloped, bullet-shaped or bacilliform viruses with a negative-sense, single-stranded RNA genome that infect vertebrates, invertebrates or plants. This ecological diversity is reflected by the diversity and complexity of their genomes. Five canonical structural protein genes are conserved in all rhabdoviruses, but may be overprinted, overlapped or inter
Authors
Ralf G. Dietzgen, Hideki Kondo, Michael M. Goodin, Gael Kurath, Nikos Vasilakis

Development of a study design and implementation plan to estimate juvenile salmon survival in Lookout Point Reservoir and other reservoirs of the Willamette Project, western Oregon

Survival estimates for juvenile salmon and steelhead fry in reservoirs impounded by high head dams are coveted data by resource managers.  However, this information is difficult to obtain because these fish are too small for tagging using conventional methods such as passive-integrated transponders or radio or acoustic transmitters.  We developed a study design and implementation plan to conduct a
Authors
Tobias J. Kock, Russell W. Perry, Fred R. Monzyk, Adam C. Pope, John M. Plumb

Survival of juvenile chinook salmon and coho salmon in the Roza Dam fish bypass and in downstream reaches of the Yakima River, Washington, 2016

Estimates of juvenile salmon survival are important data for fishery managers in the Yakima River Basin. Radiotelemetry studies during 2012–14 showed that tagged juvenile Chinook salmon (Oncorhynchus tshawytscha) that passed through the fish bypass at Roza Dam had lower survival than fish that passed through other routes at the dam. That study also identified flow-survival relationships in the rea
Authors
Tobias J. Kock, Russell W. Perry, Amy C. Hansen

Impacts of the Deepwater Horizon oil spill on deep-sea coral-associated sediment communities

Cold-water corals support distinct populations of infauna within surrounding sediments that provide vital ecosystem functions and services in the deep sea. Yet due to their sedentary existence, infauna are vulnerable to perturbation and contaminant exposure because they are unable to escape disturbance events. While multiple deep-sea coral habitats were injured by the 2010 Deepwater Horizon (DWH)
Authors
Amanda W.J. Demopoulos, Jill R. Bourque, Erik E. Cordes, Katherine Stamler

Efficacy of environmental DNA to detect and quantify Brook Trout populations in headwater streams of the Adirondack Mountains, New York

Environmental DNA (eDNA) analysis is rapidly evolving as a tool for monitoring the distributions of aquatic species. Detection of species’ populations in streams may be challenging because the persistence time for intact DNA fragments is unknown and because eDNA is diluted and dispersed by dynamic hydrological processes. During 2015, the DNA of Brook Trout Salvelinus fontinalis was analyzed from w
Authors
Barry P. Baldigo, Lee Ann Sporn, Scott D. George, Jacob Ball
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