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Publications

Find out more about Species Management Research Program through our publications. Browse the entire list below or by specific topics at the links below.

Filter Total Items: 644

Monitoring fish abundance and behavior, using multi-beam acoustic imaging sonar, at a Selective Water Withdrawal structure in Lake Billy Chinook, Deschutes River, Oregon, 2020

Collection of juvenile salmonids at Round Butte Dam is a critical part of the effort to enhance populations of anadromous fish species in the upper Deschutes River because fish that are not collected at the dam may either incur increased mortality during dam passage or remain landlocked and lost to the anadromous fish population. Adaptive resolution imaging sonar systems were used to assess the be
Authors
Collin D. Smith, Tyson W. Hatton, Noah S. Adams

Risk assessment for bull trout introduction into Sullivan Lake and Harvey Creek, northeastern Washington

The Kalispel Tribe of Indians (KT), U. S. Fish and Wildlife Service, and Washington Department of Fish and Wildlife are engaged in conservation of bull trout (Salvelinus confluentus) in the Lake Pend Oreille (LPO) Core Area. The LPO is a complex habitat core area which falls within three states (Montana, Idaho, and Washington) and a tribal entity. As part of the conservation process, KT worked in
Authors
Jill M. Hardiman, Rachel B. Breyta, Carl O. Ostberg

Distribution of bull trout (Salvelinus confluentus) in conjunction with habitat and trout assemblages in creeks within the Klamath Basin, Oregon 2010–16

Bull trout (Salvelinus confluentus) in the Klamath Basin are on the southernmost border of the range of the species, where threats are most severe and where bull trout are most imperiled. In their recovery plan the U.S. Fish and Wildlife Service (2015, https://ecos.fws.gov/ecp/report/species-with-recovery-plans) suggested that Klamath Basin bull trout are at increased risk of extirpation due to ha
Authors
Barbara A. Martin, Nolan Banish, David A. Hewitt, Brian S. Hayes, Amari Dolan-Caret, Alta C. Harris, Caylen Kelsey

Identifying monitoring information needs that support the management of fish in large rivers

Management actions intended to benefit fish in large rivers can directly or indirectly affect multiple ecosystem components. Without consideration of the effects of management on non-target ecosystem components, unintended consequences may limit management efficacy. Monitoring can help clarify the effects of management actions, including on non-target ecosystem components, but only if data are col
Authors
Timothy D. Counihan, Kristen L. Bouska, Shannon K. Brewer, R. B. Jacobson, Andrew F. Casper, Colin G. Chapman, Ian R. Waite, Kenneth R. Sheehan, Mark Pyron, Elise R. Irwin, Karen Riva-Murray, Alexa McKerrow, Jennifer M. Bayer

Using a mechanistic framework to model the density of an aquatic parasite Ceratonova shasta

Ceratonova shasta is a myxozoan parasite endemic to the Pacific Northwest of North America that is linked to low survival rates of juvenile salmonids in some watersheds such as the Klamath River basin. The density of C. shasta actinospores in the water column is typically highest in the spring (March–June), and directly influences infection rates for outmigrating juvenile salmonids. Current manage
Authors
H. E. Robinson, Julie D Alexander, Jerri L Bartholomew, Sascha L Hallett, Nicholas J. Hetrick, Russell Perry, Nicholas A. Som

Comparative virulence of spring viremia of carp virus (SVCV) genotypes in two koi varieties

Spring viremia of carp virus (SVCV), is a lethal freshwater pathogen of cyprinid fish, and Cyprinus carpio koi is a primary host species. The virus was initially described in the 1960s after outbreaks occurred in Europe, but a global expansion of SVCV has been ongoing since the late 1990s. Genetic typing of SVCV isolates separates them into 4 genotypes that are correlated with geographic origin: I
Authors
Eveline J. Emmenegger, Emma K. Bueren, Peng Jia, Noble Hendrix, Hong Liu

A climate-mediated shift in the estuarine habitat mosaic limits prey availability and reduces nursery quality for juvenile salmon

The estuarine habitat mosaic supports the reproduction, growth, and survival of resident and migratory fish species by providing a diverse portfolio of unique habitats with varying physical and biological features. Global climate change is expected to result in increasing temperatures, rising sea levels, and changes in riverine hydrology, which will have profound effects on the extent and composit
Authors
Melanie J. Davis, Isa Woo, Christopher S. Ellings, Sayre Hodgson, David Beauchamp, Glynnis Nakai, Susan E. W. De La Cruz

The effects of requested flows for native fish on sediment dynamics, geomorphology, and riparian vegetation for the Green River in Canyonlands National Park, Utah

Releases of water from Flaming Gorge Dam together with climate-related variations in runoff determine the streamflow regime of the Green River, which affects the physical characteristics of the channel and riparian ecosystem of the Green River corridor in Canyonlands National Park. The dam has decreased peak streamflows and raised base streamflows, resulting in vegetation encroachment and channel
Authors
Paul E. Grams, Jonathan M. Friedman, David Dean, David J. Topping

A novel approach for directly incorporating disease into fish stock assessment: A case study with seroprevalence data

When estimating mortality from disease with fish population models, common disease surveillance data such as infection prevalence are not always informative, especially for fast-acting diseases that may go unobserved in infrequently sampled populations. In these cases, seroprevalence — the proportion of fish with measurable antibody levels in their blood — may be more informative. In cases of life
Authors
John T. Trochta, Maya Groner, Paul Hershberger, Trevor A. Branch

Behavior of female adult Pacific lamprey (Entosphenus tridentatus) exposed to natural and synthesized odors

Conservation  and management of Pacific Lamprey Entosphenus tridentatus and other imperiled lamprey species could include the use of chemosensory cues to attract or repel migrating adults. For restoration programs, passage of adult lamprey at dams might be improved by using cues to help guide lamprey through fishway entrances. In contrast, odors might repel unwanted invasive Sea Lamprey Petromyzon
Authors
Mike Hayes, Mary L. Moser, Brian J. Burke, Aaron D. Jackson, Nicholas S. Johnson

Factors affecting spatiotemporal variation in survival of endangered winter-run Chinook Salmon outmigrating from the Sacramento River

Among four extant and declining Chinook salmon (Oncorhynchus tshawytscha) runs in California’s Central Valley, none have declined as precipitously as Sacramento River winter-run Chinook Salmon. In addition to habitat loss, migratory winter-run employ a life history strategy to reside and feed in stopover habitats on their way from freshwaters to the ocean. This life history strategy is widely cons
Authors
Jason L. Hassrick, Arnold J. Ammann, Russell Perry, Sara N. John, Miles E. Daniels

Reconnecting the Elwha River: Spatial patterns of fish response to dam removal

The removal of two large dams on the Elwha River was completed in 2014 with a goal of restoring anadromous salmonid populations. Using observations from ongoing field studies, we compiled a timeline of migratory fish passage upstream of each dam. We also used spatially continuous snorkeling surveys in consecutive years before (2007, 2008) and after (2018, 2019) dam removal during summer baseflow t
Authors
Jeffrey J. Duda, Christian E. Torgersen, Samuel J. Brenkman, Roger J. Peters, Kathryn T. Sutton, Heidi A. Connor, Philip R. Kennedy, Stephen C. Corbett, Ethan Z. Welty, Anna Geffre, Josh Geffre, Patrick Crain, Dave Shreffler, John R. McMillan, Mike McHenry, George R. Pess