Publications
Publications from USGS science centers throughout the Southeast Region.
Filter Total Items: 9949
Dead-end hollow fiber ultrafiltration capture of environmental DNA for freshwater mussel (Unionidae) species detection with metabarcoding
Insufficient water sample volumes can be a limiting factor for detecting species with environmental DNA (eDNA) from aquatic habitats. We compared detections of freshwater mussel (Unionidae) communities using large water sample volumes and dead-end hollow fiber ultrafiltration (D-HFUF or DEUF) with traditional eDNA filtration methods that use relatively small water sample volumes. Unionid species w
Authors
Anna M. McKee, Katy E. Klymus, Yer Lor, Marissa H Kaminski, Tariq Tajjioui, Nathan Johnson, Matthew Carroll, Christopher Goodson, Stephen Frank Spear
Seasonal differences and grazing pressure alter the fate of gold nanoparticles in a microcosm experiment
Gold nanoparticles (AuNPs) are used as models to track and predict NP fates and effects in ecosystems. Previous work found that aquatic macrophytes and their associated biofilm primarily drove the fate of AuNPs within aquatic ecosystems and that seasonality was an important abiotic factor in the fate of AuNPs. Therefore, the present work aims to study if grazers, by feeding on these interfaces, mo
Authors
Christina M. Bergemann, Astrid Avellan, Brittany G Perrotta, Emily S. Bernhardt, Marie Simonin
A nitrifier-enriched microbial community contributes to the degradation of environmental DNA
Environmental DNA (eDNA) surveys are a promising alternative to traditional monitoring of invasive species, rare species, and biodiversity. Detecting organism-specific eDNA reduces the need to collect physical specimens for population estimates, and the high sensitivity of eDNA assays may improve detection of rare or cryptic species. However, correlating estimated concentrations of eDNA with speci
Authors
Rachelle Elaine Beattie, Caren C. Helbing, Jacob J. Imbery, Katy E. Klymus, Jonathan Lopez Duran, Cathy A. Richter, Anita A. Thambirajah, Nathan Thompson, Thea Margaret Edwards
Nonlinear patterns of surface elevation change in coastal wetlands: The value of generalized additive models for quantifying rates of change
In the face of accelerating climate change and rising sea levels, quantifying surface elevation change dynamics in coastal wetlands can help to develop a more complete understanding of the implications of sea-level rise on coastal wetland stability. The surface elevation table-marker horizon (SET-MH) approach has been widely used to quantify and characterize surface elevation change dynamics in co
Authors
Laura Feher, Michael Osland, Darren Johnson, James Grace, Glenn R. Guntenspergen, David R. Stewart, Carlos A. Coronado-Molina, Fred H. Sklar
Estimating peak-flow quantiles for selected annual exceedance probabilities in Illinois
This report presents the methods, results, and applications of an updated flood-frequency study for the State of Illinois. This study, which uses data through September 2017, updates two previous studies that used data through 1999 and 2009, respectively. Flood-frequency estimates are used for a variety of land-use planning and infrastructure design purposes, including for the hydraulic design of
Authors
Thomas M. Over, Mackenzie K. Marti, Padraic S. O'Shea, Jennifer B. Sharpe
The consequences of neglecting reservoir storage in national-scale hydrologic models: An appraisal of key streamflow statistics
A better understanding of modeled streamflow errors related to basin reservoir storage is needed for large regions, which normally have many ungaged basins with reservoirs. We quantified the difference between modeled and observed streamflows for one process-based and three statistical-transfer hydrologic models, none of which explicitly accounted for reservoir storage. Streamflow statistics repre
Authors
Glenn A. Hodgkins, Thomas M. Over, Robert W. Dudley, Amy M. Russell, Jacob H. LaFontaine
Mapping stream and floodplain geomorphometry with the Floodplain and Channel Evaluation Tool
Broad-scale mapping of stream channel and floodplain geomorphic metrics is critical to improve the understanding of geomorphic change, biogeochemical processes, riverine habitat quality, and opportunities for management intervention. The Floodplain and Channel Evaluation Tool (FACET) was developed to provide an open-source tool for automated processing of digital elevation models (DEMs) to generat
Authors
Kristina G. Hopkins, Labeeb Ahmed, Peter R. Claggett, Samuel Lamont, Marina Metes, Gregory Noe
Survival and growth of juvenile mussels in an outdoor pond after 28-day laboratory exposure to aqueous zinc
The extent to which effects seen in chronic toxicity studies in the laboratory affect mussel fitness later in life is poorly known. We examined juvenile Fatmucket (Lampsilis siliquoidea) survival and growth for 56 d following exposure to Zn in a laboratory bioassay. We conducted a 28-d chronic toxicity bioassay with 6-wk-old juvenile mussels exposed to a control and two Zn treatments (120 and 240
Authors
Jeffery A. Steevens, James L. Kunz, Ning Wang, Christopher M. Barnhart, Serena Ciparis
CGS: Coupled growth and survival model with cohort fairness
Fish modeling in complex environments is critical for understanding drivers of population dynamics in aquatic systems. This paper proposes a Bayesian network method for modeling fish survival and growth over multiple connected rivers. Traditional fish survival models capture the effect of multiple environmental drivers (e.g., stream temperature, stream flow) by adding different variables, which in
Authors
Erhu He, Yue Wan, Benjamin Letcher, Jennifer Burlingame Hoyle Fair, Yiquin Xie, Xiaowei Jia
The founding charter of the Omic Biodiversity Observation Network (Omic BON)
Omic BON is a thematic Biodiversity Observation Network under the Group on Earth Observations Biodiversity Observation Network (GEO BON), focused on coordinating the observation of biomolecules in organisms and the environment. Our founding partners include representatives from national, regional, and global observing systems; standards organizations; and data and sample management infrastructures
Authors
Raissa Meyer, Neil Davies, Kathleen J. Pitz, Christopher Meyer, Robyn Samuel, Jane Anderson, Ward Appeltans, Katharine Barker, Francisco P. Chavez, J. Emmett Duffy, Kelly D. Goodwin, Maui Hudson, Maggie Hunter, Johannes Karstensen, Christine M. Laney, Margaret Leinen, Paula Mabee, James A. Macklin, Frank Muller-Karger, Nicolas Pade, Jay Pearlman, Lori Phillips, Pieter Provoost, Ioulia Santi, Dmitry Schigel, Lynn M. Schriml, Alice Soccodato, Saara Suominen, Katherine M. Thibault, Visotheary Ung, Jodie van de Kamp, Elycia Wallis, Ramona Walls, Pier Luigi Buttigieg
Confirmation of significant sea turtle nesting activity on a remote island chain in the Gulf of Mexico
Globally, six of the seven sea turtle species are threatened or endangered and as such, monitoring reproductive activity for these species is necessary for effective population recovery. Remote beaches provide a challenge to conducting these surveys, which often results in data gaps that can hamper management planning. Throughout the summer of 2022, aerial surveys were conducted over the Chandeleu
Authors
Margaret Lamont, Dianne Ingram, Todd Baker, Matt Weigel, Brian M. Shamblin
Genetic analysis of federally endangered Cape Sable seaside sparrow subpopulations in the Greater Everglades, USA
The federally endangered Cape Sable seaside sparrow (Ammospiza maritima mirabilis) is endemic to the Greater Everglades ecosystem in southern Florida, inhabiting fragmented marl prairies in six individual subpopulations. The subspecies is threatened by loss of breeding habitat from fire and water management. Genetic information is severely limited for the subspecies but could help inform decisions
Authors
Caitlin Beaver, Thomas Virzi, Maggie Hunter