Helen Sofaer
Helen Sofaer is a Research Ecologist at the Pacific Island Ecosystems Research Center in Hawai‘i.
Science and Products
INHABIT: A web tool for invasive plant management across the contiguous United States
INHABIT is a desktop-optimized web application and decision support tool with mapped and tabular summaries of habitat suitability models for over two hundred fifty terrestrial invasive plant species of management concern across the contiguous United States. It is the product of a scientist-practitioner partnership and is designed to facilitate enhanced invasive species management actions...
Assessing the Proliferation, Connectivity, and Consequences of Invasive Fine Fuels on the Sagebrush Biome
Invasive annual grasses can replace native vegetation and alter fire behavior, impacting a range of habitats and species. A team of researchers from the U.S. Geological Survey, Colorado State University, the Bureau of Land Management, and the U.S. Fish and Wildlife Service are working to identify factors that influence changes in the distribution and abundance of invasive annual grasses (IAGs)...
Climate matching with the climatchR R package
Climate matching is a method for understanding species distributions and ranges and may be used as part of horizon scanning. Horizon scanning is the process of examining potential risk of invasion of new invasive species. Preventing new invasive species invasion requires less time and resources than attempting to control and remove established invasive species. Horizon scanning allows resource...
Proof of concept airborne eDNA testing to detect invasive species in shipping containers
Shipping containers that are transported by water vessels traveling between islands and the mainland or other islands can act as a vector for invasive species that are accidentally transported with the cargo. If the vessel carries a lot of cargo, or cargo has areas for different species to hide, inspections can be difficult, time consuming, and expensive, or in the case of non-agricultural...
Modeling First Records to Guide Invasive Species Biosurveillance in Hawai‘i
Early detection of invasive species can enable their successful eradication. With climate change and dynamic patterns of global trade, it is difficult to predict which new invasive species will next get introduced and where introduction and establishment will occur. We are analyzing where non-native species have first established in Hawai‘i to develop mapped predictions of the relative risk of new...
Climatic and Ecological Scenarios to Guide Development of a Spatial Resist-Accept-Direct Portfolio at Nāpuʻu, Hawaiʻi
Climate change and invasive species are transforming ecosystems. The Resist-Accept-Direct (RAD) framework organizes management objectives into those that seek to Resist change and maintain historical ecological communities, those that Accept some or all aspects of ecological transformation, and those that Direct an ecological community to a preferred state. We are evaluating risks posed by climate...
Invader in Hawai‘i, the Queensland Longhorn Beetle
Acalolepta aesthetica, known as the Queensland Longhorn Beetle, is a wood-boring beetle that has recently emerged as a problematic invader on the Hawai‘i Island. We are determining its current range and identifying patterns of host tree use, focusing on culturally important and native trees.
Developing a macroecological understanding of invasive plant impacts based on abundance and trait data
Understanding invasive plant impacts can provide insight into community assembly and inform the development of successful management strategies. The impacts of invasive species depend on how they alter patterns of abundance within recipient communities and on the characteristics of the invaders and the affected species. Research has suggested that common species may be more impacted by...
Crafting Ecological Scenarios to Implement the Resist-Accept-Direct (RAD) Framework
As climate change progresses, profound environmental changes are becoming a widespread concern. A new management paradigm is developing to address this concern with a framework that encourages strategic decisions to resist, accept, or direct ecological trajectories. Effective use of the Resist-Accept-Direct (RAD) framework requires the scientific community to describe the range of...
Webinar: Projecting Climate Change Impacts on Wetland-Dependent Birds in the Prairie Pothole Region
View this webinar to learn how scientists are projecting the impacts of climate change on birds in the Prairie Pothole Region.
The Role of Climate in Shaping Invasive Plant Abundance across Different Spatial Locations
Invasive plants are a major land management problem in the Western U.S. Cheatgrass (Bromus tectorum) is the most prominent and problematic invader in cold deserts, with negative effects on rangeland fire patterns, wildlife habitats, and forage/vegetation. Red brome (B. madritensis) is an invader in the Mojave Desert, and can similarly introduce a new fire patterns to sensitive warm...
Filter Total Items: 22
Island of Hawai'i, Host preferences of Acalolepta aesthetica 2020-2023
Acalolepta aesthetica (Coleoptera: Cerambycidae) is a beetle species whose larvae develop within branches and stems of host plants and can harm or kill host trees. Since this species was detected on the Island of Hawai'i in 2009, it has been documented to have a wide host breadth but its host preferences and its potential to use native plant species as hosts have not been formally...
Hawaiʻi Volcanoes National Park Effects of Felling and Tarping Trees on ROD Viability and Ambrosia Beetle Activity 2022-2023
Felling and tarping is a common management strategy for ʻōhiʻa lehua trees (Metrosideros polymorpha) infected with rapid ʻōhiʻa death (ROD) caused by Ceratocystis lukuohia and Ceratocystis huliohia fungal pathogens and spread via ambrosia beetles (Coleoptera: Curculionidae). In order to understand how tarping may decrease fungal viability or the spread of viable beetle frass, this study...
Island of Hawai'i Ambrosia Beetle Trapping Data and Locations of Suspected Ceratocystis-positive ʻōhiʻa at Two Sites, 2021-2022
This data release includes data and metadata documenting 1) ambrosia beetle (Coleoptera: Curculionidae) species caught in multi-panel traps within ʻōhiʻa lehua (Metrosideros polymorpha) dominated forests in Hawaiʻi Volcanoes National Park as well as results from culturing Ceratocystis lukuohia or Ceratocystis huliohia, the fungi that cause rapid ʻōhiʻa death (ROD), from these traps, 2)...
Horizon Scan for Vertebrates in Trade
This is a dataset summarizing filtering criteria and rapid risk assessments for ~25,000 species undertaken during a data-driven horizon scan of imported fish, amphibians, reptiles, birds, and mammals. The files represented in this dataset are the following: 1) 'species_filtering_metadata_table.xlsx' is the tabular summary of all intake list species names and the reason for inclusion...
Conterminous U.S. data used for modeling non-native vascular plant first records 1780-2022
This dataset was used for modeling the spatial distribution of first records of non-native plants in the conterminous U.S. The input dataset (alldata_input_frdm.csv) contains 4,763 rows of data, representing 1,538 counties in the contiguous U.S., 25 decades, and 3,389 first records of invasive terrestrial plant species (Williams et al., 2024) found in the US-RIIS list (Simpson et al...
Community level traits of invaded plant communities in the United States
Data were compiled from large trait databases for functional above and belowground traits (e.g. specific leaf area, specific root length, etc) of plants in communities across the United States along with information about the degree to which invasive species dominate those communities.
Rates of change in invasive annual grass cover to inform potential management opportunities across the sagebrush biome of the western United States
We used Rangeland Condition Monitoring Assessment and Projection (RCMAP) maps of annual herbaceous fractional components (mostly invasive annual grasses) to calculate mean rate of change in invasive annual grass cover over five-year time periods (ratesOfChange1987_2021.zip). We also created a map that identifies zones of the sagebrush biome that could be prioritized for different...
First and Second Record of US-RIIS Vascular Plant Species in Contiguous United States
This is a dataset containing the first and second record of georeferenced observations of introduced and invasive vascular plant species in the contiguous United States (CONUS). Non-native plant species were identified using the United States Register of Introduced and Invasive Species (US-RIIS) list. After identifying a list of plants non-native to CONUS, we obtained presence data from...
Management summary table for INHABIT species potential distribution across the contiguous United States: additional management units
We developed habitat suitability models for invasive plant species selected by Department of Interior land management agencies. We applied the modeling workflow developed in Young et al. 2020 to species not included in the original case studies. Our methodology balanced trade-offs between developing highly customized models for a few species versus fitting non-specific and generic models...
Hawaiʻi Ambrosia Beetle Trap Lures and Repellents 2020-2021 (ver. 2.0, October 2024)
This data release includes data and metadata containing (1) ambrosia beetle (Coleoptera: Curculionidae) trapping data using two different lures at Waiākea Forest Reserve and ʻŌlaʻa Forest of Hawai'i Volcanoes National Park, (2) ambrosia beetle trapping data using paired lures and repellents from two trials conducted at Waiākea Forest Reserve, and (3) the localities of all traps used in...
INHABIT species potential distribution across the contiguous United States (ver. 3.0, February 2023)
We developed habitat suitability models for invasive plant species selected by Department of Interior land management agencies. We applied the modeling workflow developed in Young et al. 2020 to species not included in the original case studies. Our methodology balanced trade-offs between developing highly customized models for a few species versus fitting non-specific and generic models...
Data to create and evaluate distribution models for invasive species for different geographic extents
We developed habitat suitability models for invasive plant species selected by Department of Interior land management agencies. We applied the modeling workflow developed in Young et al. 2020 to species not included in the original case studies. Our methodology balanced trade-offs between developing highly customized models for a few species versus fitting non-specific and generic models...
Filter Total Items: 37
A quantitative classification of the geography of non-native flora in the United States
AimNon-native plants have the potential to harm ecosystems. Harm is classically related to their distribution and abundance, but this geographical information is often unknown. Here, we assess geographical commonness as a potential indicator of invasive status for non-native flora in the United States. Geographical commonness could inform invasion risk assessments across species and...
Authors
Bethany A. Bradley, Annette Evans, Helen Sofaer, Montserrat Vilà, David Barnett, Evelyn M. Beaury, Dana M. Blumenthal, Jeffrey Corbin, Jeffrey Dukes, Regan Early, Ines Ibanez, Ian Pearse, Lais Petri, Cascade J.B. Sorte
Using plant invasions to compare occurrence- and abundance-based calculations of biotic homogenisation: Are results complementary or contradictory?
AimBeta diversity quantifies the similarity of ecological assemblages. Its increase, known as biotic homogenisation, can be a consequence of biological invasions. However, species occurrence (presence/absence) and abundance-based analyses can produce contradictory assessments of the magnitude and direction of changes in beta diversity. Previous work indicates these contradictions should...
Authors
D.M. Buonaiuto, David Barnett, Dana M. Blumenthal, Andrea N. Nebhut, Ian Pearse, Helen Sofaer, Cascade J. B. Sorte, Jeffrey D. Corbin, Regan Early, Magda Garbowski, Ines Ibanez, Daniel C. Laughlin, Laís Petri, Montserrat Vilà, Bethany A. Bradley
Vertebrates in trade that pose high invasion risk to the United States
The United States imports thousands of live vertebrate species annually as part of legal trade. Escapes and releases from captivity are major pathways of invasion, however, the risk posed by the thousands of imported vertebrate species has not been systematically assessed. We conducted a horizon scan that used a data-driven climate match to filter a list of nearly 15,000 taxa drawn from...
Authors
Wesley M. Daniel, Helen Sofaer, Catherine S. Jarnevich, Richard A. Erickson, Brett Alexander DeGregorio, Peder Scott Engelstad, Jonathan (Contractor) Adam Freedman, Susan Canavan, Emily Marie Dean, Michael J Adams, Charmayne L. Anderson, Mindy Barnett, Marybeth K. Brey, Kyle J. Brumm, Matthew S. Bunting, Emily Caffrey, Laura Cardador, J. Carter, Phillip Cassey, Duane Chapman, Natalie M. Claunch, Timothy D. Counihan, Kristin P. Davis, Anant Deshwal, Andrew K. Douglas, Corey Garland Dunn, Chase A. Ehlo, Katie Everett, Jason M. Gleditsch, Andrew Grosse, Zoey Hendrickson, Steven C. Hess, Jeffrey H. Hill, Nick D. Holmes, Ana V. Longo, Julie L. Lockwood, Doran M. Mason, Ashley McDonald, Matthew E. Neilson, Kristen Reaver, Robert Reed, Caleb Powell Roberts, Jane Rogosch, Christina Romagosa, James K. Russell, Annie Simpson, Scott S. Smith, Jinelle H. Sperry, Quenton M. Tuckett, Kurt C. Vercauteren, J. Hardin Waddle, Christian Wanamaker, John David Willson, Arden Williams, Deah Lieurance
First records distribution models to guide biosurveillance for non-native species
Quickly locating new populations of non-native species can reduce the ecological and economic costs of species invasions. However, the difficulty of predicting which new non-native species will establish, and where, has limited active post-border biosurveillance efforts. Because pathways of introduction underlie spatial patterns of establishment risk, an intuitive approach is to search...
Authors
Helen Sofaer, Demetra A. Williams, Catherine S. Jarnevich, Keana S. Shadwell, Caroline Kittle, Ian Pearse, Lucas Fortini, Kelsey C. Brock
Rates of change in invasive annual grass cover to inform management actions in sagebrush ecosystems
No abstract available.
Authors
Morgan Dake Roche, Michele R. Crist, Cameron L. Aldridge, Helen Sofaer, Catherine S. Jarnevich, Julie A. Heinrichs
Observed and potential range shifts of native and non-native species with climate change
There is broad concern that the range shifts of global flora and fauna will not keep up with climate change, increasing the likelihood of population declines and extinctions. Many populations of nonnative species already have advantages over native species, including widespread human-aided dispersal and release from natural enemies. But do nonnative species also have an advantage with...
Authors
Bethany A. Bradley, Evelyn M. Beaury, Belinda Gallardo, Ines Ibáñez, Catherine S. Jarnevich, Toni Lyn Morelli, Helen Sofaer, Cascade J.B. Sorte, Montserrat Vila
Environmental and geographical factors influence the occurrence and abundance of the southern house mosquito, Culex quinquefasciatus, in Hawai‘i
Hawaiian honeycreepers, a group of endemic Hawaiian forest birds, are being threatened by avian malaria, a non-native disease that is driving honeycreepers populations to extinction. Avian malaria is caused by the parasite Plasmodium relictum, which is transmitted by the invasive mosquito Culex quinquefasciatus. Environmental and geographical factors play an important role in shaping...
Authors
Oswaldo Villena, Katherine Maria McClure, Richard J. Camp, Dennis Lapointe, Carter T. Atkinson, Helen Sofaer, Lucas Fortini
The use of semiochemicals for attracting and repelling invasive ambrosia beetles (Coleoptera: Curculionidae) in ʻōhiʻa (Metrosideros polymorpha) forests
Early detection of invasive species is critical for preventing ecological and economic damage and maintaining ecosystem health. In Hawaiʻi, a complex of generalist ambrosia beetle species in the tribe Xyleborini (Coleoptera: Scolytinae) are threatening the health and productivity of forests and crops due to their association with tree diseases such as rapid ʻōhiʻa death (ROD) and key...
Authors
Kylle Roy, Helen Sofaer, Robert W. Peck, Ellen Dunkle, Dan Mikros, Sheri L. Smith, Matthew D. Ginzel
Macroscale analyses suggest invasive plant impacts depend more on the composition of invading plants than on environmental context
AimNative biodiversity is threatened by the spread of non-native invasive species. Many studies demonstrate that invasions reduce local biodiversity but we lack an understanding of how impacts vary across environments at the macroscale. Using ~11,500 vegetation surveys from ecosystems across the United States, we quantified how the relationship between non-native plant cover and native...
Authors
Evelyn M. Beaury, Helen Sofaer, Regan Early, Ian Pearse, Dana M. Blumenthal, Jeffrey Corbin, Jeffrey M. Diez, Jeffrey S. Dukes, David T. Barnett, Ines Ibáñez, Lais Petri, Montserrat Vila, Bethany A. Bradley
Invasion-mediated mutualism disruption is evident across heterogeneous environmental conditions and varying invasion intensities
The impact of a biological invasion on native communities is expected to be uneven across invaded landscapes due to differences in local abiotic conditions, invader abundance, and traits and composition of the native community. One way to improve predictive ability about the impact of an invasive species given variable conditions is to exploit known mechanisms driving invasive species'...
Authors
Morgan Dake Roche, Ian Pearse, Helen Sofaer, Stephanie N Kivlin, Gregory Spyreas, David N. Zaya, Susan Kalisz
Land cover differentially affects abundance of common and rare birds
While rare species are vulnerable to global change, large declines in common species (i.e., those with large population sizes, large geographic distributions, and/or that are habitat generalists) also are of conservation concern. Understanding if and how commonness mediates species' responses to global change, including land cover change, can help guide conservation strategies. We...
Authors
Kristin P. Davis, Paul C. Banko, Liba Pejchar
Invaders at the doorstep: Using species distribution modeling to enhance invasive plant watch lists
Watch lists of invasive species that threaten a particular land management unit are useful tools because they can draw attention to invasive species at the very early stages of invasion when early detection and rapid response efforts are often most successful. However, watch lists typically rely on the subjective selection of invasive species by experts or on the use of spotty occurrence...
Authors
Catherine S. Jarnevich, Peder S. Engelstad, Jillian Marie Laroe, Brandon Hays, Terri Hogan, Jeremy Jirak, Ian Pearse, Janet S. Prevey, Jennifer Sieraki, Annie Simpson, Jess Wenick, Nicholas E. Young, Helen Sofaer
High-throughput calculations of climatch scores
Matching climate envelopes allows people to examine how potential invasive species may match habitats. This repository contains code for using the climatchR package for high-throughput calculations of climatch scores for species using GBIF data. Climatch is based upon the climatch algorithm as implemented through the climatchR package.
climatchR: An implementation of Climatch in R
Matching climate envelopes of allows people to examine how potential invasive species may match habitats. The Australian government created Climatch to do allow for these comparisons. However, this webpage does not allow for readily scripting climate matching. Hence, the authors created climatchR, an R package (R Core Team 2020) implementing the climatch method in R. This was created to...
Science and Products
INHABIT: A web tool for invasive plant management across the contiguous United States
INHABIT is a desktop-optimized web application and decision support tool with mapped and tabular summaries of habitat suitability models for over two hundred fifty terrestrial invasive plant species of management concern across the contiguous United States. It is the product of a scientist-practitioner partnership and is designed to facilitate enhanced invasive species management actions...
Assessing the Proliferation, Connectivity, and Consequences of Invasive Fine Fuels on the Sagebrush Biome
Invasive annual grasses can replace native vegetation and alter fire behavior, impacting a range of habitats and species. A team of researchers from the U.S. Geological Survey, Colorado State University, the Bureau of Land Management, and the U.S. Fish and Wildlife Service are working to identify factors that influence changes in the distribution and abundance of invasive annual grasses (IAGs)...
Climate matching with the climatchR R package
Climate matching is a method for understanding species distributions and ranges and may be used as part of horizon scanning. Horizon scanning is the process of examining potential risk of invasion of new invasive species. Preventing new invasive species invasion requires less time and resources than attempting to control and remove established invasive species. Horizon scanning allows resource...
Proof of concept airborne eDNA testing to detect invasive species in shipping containers
Shipping containers that are transported by water vessels traveling between islands and the mainland or other islands can act as a vector for invasive species that are accidentally transported with the cargo. If the vessel carries a lot of cargo, or cargo has areas for different species to hide, inspections can be difficult, time consuming, and expensive, or in the case of non-agricultural...
Modeling First Records to Guide Invasive Species Biosurveillance in Hawai‘i
Early detection of invasive species can enable their successful eradication. With climate change and dynamic patterns of global trade, it is difficult to predict which new invasive species will next get introduced and where introduction and establishment will occur. We are analyzing where non-native species have first established in Hawai‘i to develop mapped predictions of the relative risk of new...
Climatic and Ecological Scenarios to Guide Development of a Spatial Resist-Accept-Direct Portfolio at Nāpuʻu, Hawaiʻi
Climate change and invasive species are transforming ecosystems. The Resist-Accept-Direct (RAD) framework organizes management objectives into those that seek to Resist change and maintain historical ecological communities, those that Accept some or all aspects of ecological transformation, and those that Direct an ecological community to a preferred state. We are evaluating risks posed by climate...
Invader in Hawai‘i, the Queensland Longhorn Beetle
Acalolepta aesthetica, known as the Queensland Longhorn Beetle, is a wood-boring beetle that has recently emerged as a problematic invader on the Hawai‘i Island. We are determining its current range and identifying patterns of host tree use, focusing on culturally important and native trees.
Developing a macroecological understanding of invasive plant impacts based on abundance and trait data
Understanding invasive plant impacts can provide insight into community assembly and inform the development of successful management strategies. The impacts of invasive species depend on how they alter patterns of abundance within recipient communities and on the characteristics of the invaders and the affected species. Research has suggested that common species may be more impacted by...
Crafting Ecological Scenarios to Implement the Resist-Accept-Direct (RAD) Framework
As climate change progresses, profound environmental changes are becoming a widespread concern. A new management paradigm is developing to address this concern with a framework that encourages strategic decisions to resist, accept, or direct ecological trajectories. Effective use of the Resist-Accept-Direct (RAD) framework requires the scientific community to describe the range of...
Webinar: Projecting Climate Change Impacts on Wetland-Dependent Birds in the Prairie Pothole Region
View this webinar to learn how scientists are projecting the impacts of climate change on birds in the Prairie Pothole Region.
The Role of Climate in Shaping Invasive Plant Abundance across Different Spatial Locations
Invasive plants are a major land management problem in the Western U.S. Cheatgrass (Bromus tectorum) is the most prominent and problematic invader in cold deserts, with negative effects on rangeland fire patterns, wildlife habitats, and forage/vegetation. Red brome (B. madritensis) is an invader in the Mojave Desert, and can similarly introduce a new fire patterns to sensitive warm...
Filter Total Items: 22
Island of Hawai'i, Host preferences of Acalolepta aesthetica 2020-2023
Acalolepta aesthetica (Coleoptera: Cerambycidae) is a beetle species whose larvae develop within branches and stems of host plants and can harm or kill host trees. Since this species was detected on the Island of Hawai'i in 2009, it has been documented to have a wide host breadth but its host preferences and its potential to use native plant species as hosts have not been formally...
Hawaiʻi Volcanoes National Park Effects of Felling and Tarping Trees on ROD Viability and Ambrosia Beetle Activity 2022-2023
Felling and tarping is a common management strategy for ʻōhiʻa lehua trees (Metrosideros polymorpha) infected with rapid ʻōhiʻa death (ROD) caused by Ceratocystis lukuohia and Ceratocystis huliohia fungal pathogens and spread via ambrosia beetles (Coleoptera: Curculionidae). In order to understand how tarping may decrease fungal viability or the spread of viable beetle frass, this study...
Island of Hawai'i Ambrosia Beetle Trapping Data and Locations of Suspected Ceratocystis-positive ʻōhiʻa at Two Sites, 2021-2022
This data release includes data and metadata documenting 1) ambrosia beetle (Coleoptera: Curculionidae) species caught in multi-panel traps within ʻōhiʻa lehua (Metrosideros polymorpha) dominated forests in Hawaiʻi Volcanoes National Park as well as results from culturing Ceratocystis lukuohia or Ceratocystis huliohia, the fungi that cause rapid ʻōhiʻa death (ROD), from these traps, 2)...
Horizon Scan for Vertebrates in Trade
This is a dataset summarizing filtering criteria and rapid risk assessments for ~25,000 species undertaken during a data-driven horizon scan of imported fish, amphibians, reptiles, birds, and mammals. The files represented in this dataset are the following: 1) 'species_filtering_metadata_table.xlsx' is the tabular summary of all intake list species names and the reason for inclusion...
Conterminous U.S. data used for modeling non-native vascular plant first records 1780-2022
This dataset was used for modeling the spatial distribution of first records of non-native plants in the conterminous U.S. The input dataset (alldata_input_frdm.csv) contains 4,763 rows of data, representing 1,538 counties in the contiguous U.S., 25 decades, and 3,389 first records of invasive terrestrial plant species (Williams et al., 2024) found in the US-RIIS list (Simpson et al...
Community level traits of invaded plant communities in the United States
Data were compiled from large trait databases for functional above and belowground traits (e.g. specific leaf area, specific root length, etc) of plants in communities across the United States along with information about the degree to which invasive species dominate those communities.
Rates of change in invasive annual grass cover to inform potential management opportunities across the sagebrush biome of the western United States
We used Rangeland Condition Monitoring Assessment and Projection (RCMAP) maps of annual herbaceous fractional components (mostly invasive annual grasses) to calculate mean rate of change in invasive annual grass cover over five-year time periods (ratesOfChange1987_2021.zip). We also created a map that identifies zones of the sagebrush biome that could be prioritized for different...
First and Second Record of US-RIIS Vascular Plant Species in Contiguous United States
This is a dataset containing the first and second record of georeferenced observations of introduced and invasive vascular plant species in the contiguous United States (CONUS). Non-native plant species were identified using the United States Register of Introduced and Invasive Species (US-RIIS) list. After identifying a list of plants non-native to CONUS, we obtained presence data from...
Management summary table for INHABIT species potential distribution across the contiguous United States: additional management units
We developed habitat suitability models for invasive plant species selected by Department of Interior land management agencies. We applied the modeling workflow developed in Young et al. 2020 to species not included in the original case studies. Our methodology balanced trade-offs between developing highly customized models for a few species versus fitting non-specific and generic models...
Hawaiʻi Ambrosia Beetle Trap Lures and Repellents 2020-2021 (ver. 2.0, October 2024)
This data release includes data and metadata containing (1) ambrosia beetle (Coleoptera: Curculionidae) trapping data using two different lures at Waiākea Forest Reserve and ʻŌlaʻa Forest of Hawai'i Volcanoes National Park, (2) ambrosia beetle trapping data using paired lures and repellents from two trials conducted at Waiākea Forest Reserve, and (3) the localities of all traps used in...
INHABIT species potential distribution across the contiguous United States (ver. 3.0, February 2023)
We developed habitat suitability models for invasive plant species selected by Department of Interior land management agencies. We applied the modeling workflow developed in Young et al. 2020 to species not included in the original case studies. Our methodology balanced trade-offs between developing highly customized models for a few species versus fitting non-specific and generic models...
Data to create and evaluate distribution models for invasive species for different geographic extents
We developed habitat suitability models for invasive plant species selected by Department of Interior land management agencies. We applied the modeling workflow developed in Young et al. 2020 to species not included in the original case studies. Our methodology balanced trade-offs between developing highly customized models for a few species versus fitting non-specific and generic models...
Filter Total Items: 37
A quantitative classification of the geography of non-native flora in the United States
AimNon-native plants have the potential to harm ecosystems. Harm is classically related to their distribution and abundance, but this geographical information is often unknown. Here, we assess geographical commonness as a potential indicator of invasive status for non-native flora in the United States. Geographical commonness could inform invasion risk assessments across species and...
Authors
Bethany A. Bradley, Annette Evans, Helen Sofaer, Montserrat Vilà, David Barnett, Evelyn M. Beaury, Dana M. Blumenthal, Jeffrey Corbin, Jeffrey Dukes, Regan Early, Ines Ibanez, Ian Pearse, Lais Petri, Cascade J.B. Sorte
Using plant invasions to compare occurrence- and abundance-based calculations of biotic homogenisation: Are results complementary or contradictory?
AimBeta diversity quantifies the similarity of ecological assemblages. Its increase, known as biotic homogenisation, can be a consequence of biological invasions. However, species occurrence (presence/absence) and abundance-based analyses can produce contradictory assessments of the magnitude and direction of changes in beta diversity. Previous work indicates these contradictions should...
Authors
D.M. Buonaiuto, David Barnett, Dana M. Blumenthal, Andrea N. Nebhut, Ian Pearse, Helen Sofaer, Cascade J. B. Sorte, Jeffrey D. Corbin, Regan Early, Magda Garbowski, Ines Ibanez, Daniel C. Laughlin, Laís Petri, Montserrat Vilà, Bethany A. Bradley
Vertebrates in trade that pose high invasion risk to the United States
The United States imports thousands of live vertebrate species annually as part of legal trade. Escapes and releases from captivity are major pathways of invasion, however, the risk posed by the thousands of imported vertebrate species has not been systematically assessed. We conducted a horizon scan that used a data-driven climate match to filter a list of nearly 15,000 taxa drawn from...
Authors
Wesley M. Daniel, Helen Sofaer, Catherine S. Jarnevich, Richard A. Erickson, Brett Alexander DeGregorio, Peder Scott Engelstad, Jonathan (Contractor) Adam Freedman, Susan Canavan, Emily Marie Dean, Michael J Adams, Charmayne L. Anderson, Mindy Barnett, Marybeth K. Brey, Kyle J. Brumm, Matthew S. Bunting, Emily Caffrey, Laura Cardador, J. Carter, Phillip Cassey, Duane Chapman, Natalie M. Claunch, Timothy D. Counihan, Kristin P. Davis, Anant Deshwal, Andrew K. Douglas, Corey Garland Dunn, Chase A. Ehlo, Katie Everett, Jason M. Gleditsch, Andrew Grosse, Zoey Hendrickson, Steven C. Hess, Jeffrey H. Hill, Nick D. Holmes, Ana V. Longo, Julie L. Lockwood, Doran M. Mason, Ashley McDonald, Matthew E. Neilson, Kristen Reaver, Robert Reed, Caleb Powell Roberts, Jane Rogosch, Christina Romagosa, James K. Russell, Annie Simpson, Scott S. Smith, Jinelle H. Sperry, Quenton M. Tuckett, Kurt C. Vercauteren, J. Hardin Waddle, Christian Wanamaker, John David Willson, Arden Williams, Deah Lieurance
First records distribution models to guide biosurveillance for non-native species
Quickly locating new populations of non-native species can reduce the ecological and economic costs of species invasions. However, the difficulty of predicting which new non-native species will establish, and where, has limited active post-border biosurveillance efforts. Because pathways of introduction underlie spatial patterns of establishment risk, an intuitive approach is to search...
Authors
Helen Sofaer, Demetra A. Williams, Catherine S. Jarnevich, Keana S. Shadwell, Caroline Kittle, Ian Pearse, Lucas Fortini, Kelsey C. Brock
Rates of change in invasive annual grass cover to inform management actions in sagebrush ecosystems
No abstract available.
Authors
Morgan Dake Roche, Michele R. Crist, Cameron L. Aldridge, Helen Sofaer, Catherine S. Jarnevich, Julie A. Heinrichs
Observed and potential range shifts of native and non-native species with climate change
There is broad concern that the range shifts of global flora and fauna will not keep up with climate change, increasing the likelihood of population declines and extinctions. Many populations of nonnative species already have advantages over native species, including widespread human-aided dispersal and release from natural enemies. But do nonnative species also have an advantage with...
Authors
Bethany A. Bradley, Evelyn M. Beaury, Belinda Gallardo, Ines Ibáñez, Catherine S. Jarnevich, Toni Lyn Morelli, Helen Sofaer, Cascade J.B. Sorte, Montserrat Vila
Environmental and geographical factors influence the occurrence and abundance of the southern house mosquito, Culex quinquefasciatus, in Hawai‘i
Hawaiian honeycreepers, a group of endemic Hawaiian forest birds, are being threatened by avian malaria, a non-native disease that is driving honeycreepers populations to extinction. Avian malaria is caused by the parasite Plasmodium relictum, which is transmitted by the invasive mosquito Culex quinquefasciatus. Environmental and geographical factors play an important role in shaping...
Authors
Oswaldo Villena, Katherine Maria McClure, Richard J. Camp, Dennis Lapointe, Carter T. Atkinson, Helen Sofaer, Lucas Fortini
The use of semiochemicals for attracting and repelling invasive ambrosia beetles (Coleoptera: Curculionidae) in ʻōhiʻa (Metrosideros polymorpha) forests
Early detection of invasive species is critical for preventing ecological and economic damage and maintaining ecosystem health. In Hawaiʻi, a complex of generalist ambrosia beetle species in the tribe Xyleborini (Coleoptera: Scolytinae) are threatening the health and productivity of forests and crops due to their association with tree diseases such as rapid ʻōhiʻa death (ROD) and key...
Authors
Kylle Roy, Helen Sofaer, Robert W. Peck, Ellen Dunkle, Dan Mikros, Sheri L. Smith, Matthew D. Ginzel
Macroscale analyses suggest invasive plant impacts depend more on the composition of invading plants than on environmental context
AimNative biodiversity is threatened by the spread of non-native invasive species. Many studies demonstrate that invasions reduce local biodiversity but we lack an understanding of how impacts vary across environments at the macroscale. Using ~11,500 vegetation surveys from ecosystems across the United States, we quantified how the relationship between non-native plant cover and native...
Authors
Evelyn M. Beaury, Helen Sofaer, Regan Early, Ian Pearse, Dana M. Blumenthal, Jeffrey Corbin, Jeffrey M. Diez, Jeffrey S. Dukes, David T. Barnett, Ines Ibáñez, Lais Petri, Montserrat Vila, Bethany A. Bradley
Invasion-mediated mutualism disruption is evident across heterogeneous environmental conditions and varying invasion intensities
The impact of a biological invasion on native communities is expected to be uneven across invaded landscapes due to differences in local abiotic conditions, invader abundance, and traits and composition of the native community. One way to improve predictive ability about the impact of an invasive species given variable conditions is to exploit known mechanisms driving invasive species'...
Authors
Morgan Dake Roche, Ian Pearse, Helen Sofaer, Stephanie N Kivlin, Gregory Spyreas, David N. Zaya, Susan Kalisz
Land cover differentially affects abundance of common and rare birds
While rare species are vulnerable to global change, large declines in common species (i.e., those with large population sizes, large geographic distributions, and/or that are habitat generalists) also are of conservation concern. Understanding if and how commonness mediates species' responses to global change, including land cover change, can help guide conservation strategies. We...
Authors
Kristin P. Davis, Paul C. Banko, Liba Pejchar
Invaders at the doorstep: Using species distribution modeling to enhance invasive plant watch lists
Watch lists of invasive species that threaten a particular land management unit are useful tools because they can draw attention to invasive species at the very early stages of invasion when early detection and rapid response efforts are often most successful. However, watch lists typically rely on the subjective selection of invasive species by experts or on the use of spotty occurrence...
Authors
Catherine S. Jarnevich, Peder S. Engelstad, Jillian Marie Laroe, Brandon Hays, Terri Hogan, Jeremy Jirak, Ian Pearse, Janet S. Prevey, Jennifer Sieraki, Annie Simpson, Jess Wenick, Nicholas E. Young, Helen Sofaer
High-throughput calculations of climatch scores
Matching climate envelopes allows people to examine how potential invasive species may match habitats. This repository contains code for using the climatchR package for high-throughput calculations of climatch scores for species using GBIF data. Climatch is based upon the climatch algorithm as implemented through the climatchR package.
climatchR: An implementation of Climatch in R
Matching climate envelopes of allows people to examine how potential invasive species may match habitats. The Australian government created Climatch to do allow for these comparisons. However, this webpage does not allow for readily scripting climate matching. Hence, the authors created climatchR, an R package (R Core Team 2020) implementing the climatch method in R. This was created to...