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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41763

Coupling validation effort with in situ bioacoustic data improves estimating relative activity and occupancy for multiple species with cross-species misclassifications

The increasing complexity and pace of ecological change requires natural resource managers to consider entire species assemblages. Acoustic recording units (ARUs) require minimal cost and effort to deploy and inform relative activity, or encounter rates, for multiple species simultaneously. ARU-based surveys require post-processing of the recordings via software algorithms that assign a species la
Authors
Christian Stratton, Kathryn M. Irvine, Katharine M. Banner, Wilson J. Wright, Cori Lausen, Jason Rae

Atmospheric river storm flooding influences tidal marsh elevation building processes

Disturbances are a key component of ecological processes in coastal ecosystems. Investigating factors that affect tidal marsh accretion and elevation change is important, largely due to accelerating sea-level rise and the ecological and economic value of wetlands. Sediment accumulation rates, elevation change, and flooding were examined at five marshes along a riverine-tidal gradient in the northe
Authors
Karen M. Thorne, Scott Jones, Chase M. Freeman, Kevin J. Buffington, Christopher N. Janousek, Glenn R. Guntenspergen

Salmonella enterica serovar Typhimurium from wild birds in the United States represent distinct lineages defined by bird type

Salmonella enterica serovar Typhimurium is typically considered a host generalist; however, certain isolates are associated with specific hosts and show genetic features of host adaptation. Here, we sequenced 131 S. Typhimurium isolates from wild birds collected in 30 U.S. states during 1978-2019. We found that isolates from broad taxonomic host groups including passerine birds, water birds (Aequo
Authors
Yezhi Fu, Nkuchia M. M’ikanatha, Jeffrey M. Lorch, David S. Blehert, Brenda M. Berlowski-Zier, Chris A. Whitehouse, Shaoting Li, Xiangyu Deng, Jared C. Smith, Nikki W. Shariat, Erin M. Nawrocki, Edward G. Dudley

Precision of headwater stream permanence estimates from a monthly water balance model in the Pacific Northwest, USA

Stream permanence classifications (i.e., perennial, intermittent, ephemeral) are a primary consideration to determine stream regulatory status in the United States (U.S.) and are an important indicator of environmental conditions and biodiversity. However, at present, no models or products adequately describe surface water presence for regulatory determinations. We modified the Thornthwaite monthl
Authors
Konrad Hafen, Kyle W. Blasch, Paul E. Gessler, Roy Sando, Alan H. Rea

Complex life-cycles in trophically transmitted helminths: Do the benefits of increased growth and transmission outweigh generalism and complexity costs?

Why do so many parasitic worms have complex life-cycles? A complex life-cycle has at least two hypothesized costs: (i) worms with longer life-cycles, i.e. more successive hosts, must be generalists at the species level, which might reduce lifetime survival or growth, and (ii) each required host transition adds to the risk that a worm will fail to complete its life-cycle. Comparing hundreds of trop
Authors
Daniel P. Benesh, James C Chubb, Kevin D. Lafferty, Geoff A Parker

Risk assessment of chanchita Cichlasoma dimerus (Heckel, 1840), a newly identified non-native cichlid fish in Florida

The risk of a newly discovered non-native fish species in Florida (USA): Cichlasoma dimerus ([Heckel, 1840]; Family: Cichlidae) is assessed. Its tolerance to cold temperatures was experimentally evaluated and information on its biology and ecology was synthesized. In the cold-temperature tolerance experiment, temperature was lowered from 24 °C by increments of 1 °C per hour, mimicking a typical co
Authors
Mary Brown, Robert H. Robins, Pam Schofield

Keeping an eye on water quality from the sky

You can learn a lot about rivers, lakes, estuaries, and oceans by looking down at them from the sky. Scientists use a technique called remote sensing to measure the amount of light or heat energy reflected and emitted from the Earth. Sensors can be on satellites or mounted on airplanes, helicopters, or drones. Scientists use this information to map the quality of water in the San Francisco Bay-Del
Authors
Francine H. Mejia, Christian E. Torgersen, Cédric G Fichot

Are little brown bats (Myotis lucifugus) impacted by dietary exposure to microcystin?

The cyanobacterium, Microcystis aeruginosa, can produce the hepatotoxin microcystin. When toxic M. aeruginosa overwinters in the sediments of lakes, it may be ingested by aquatic insects and bioaccumulate in nymphs of Hexagenia mayflies. When volant Hexagenia emerge from lakes to reproduce, they provide an abundant, albeit temporary, food source for many terrestrial organisms including bats. Littl
Authors
Devon N. Jones, Gregory L. Boyer, Julia S. Lankton, Megan Woller-Skar, Amy L. Russell

Stochastic agent-based model for predicting turbine-scale raptor movements during updraft-subsidized directional flights

Rapid expansion of wind energy development across the world has highlighted the need to better understand turbine-caused avian mortality. The risk to golden eagles (Aquila chrysaetos) is of particular concern due to their small population size and conservation status. Golden eagles subsidize their flight in part by soaring in orographic updrafts, which can place them in conflict with wind turbines
Authors
Rimple Sandhu, Charles Tripp, Eliot Quon, Regis Thedin, Michael Lawson, David Brandes, Chris Farmer, Tricia A. Miller, Caroline Draxl, Paula Doubrawa, Lindy Williams, Adam E. Duerr, Melissa A. Braham, Todd E. Katzner

Effect of adult male sterilization on the behavior and social associations of a feral polygynous ungulate: The horse

Castration is commonly used to control the behavior of companion animals and livestock, yet there have been few longitudinal studies of its effects. Despite the ubiquity of this surgery in ridden horses, the effects of castration (termed gelding in horses) have rarely been examined in a reproductive population. We tested effects of gelding on maintenance and social behaviors of individuals pre- an
Authors
Sarah R. B. King, Kathryn A. Schoenecker, Mary J. Cole

Immunopathology

No abstract available.
Authors
Khattapan Jantawongsri, Brian Jones, Diane G. Elliott, Heike Schmidt-Posthaus, Barbara F. Nowak

The use of continuous sediment-transport measurements to improve sand-load estimates in a large sand-bedded river: The Lower Chippewa River, WI

Accurately determining sediment loads is necessary for managing river environments but is difficult because multiple processes can lead to large discharge-independent changes in sediment transport. Thus, estimations of sediment load using discharge–sediment rating curves fit to sparse or historical sediment-transport measurements can be inaccurate, necessitating alternative approaches to reduce un
Authors
David Dean, David Topping, D. D. Buscombe, Joel T. Groten, Jeffrey R. Ziegeweid, Faith A. Fitzpatrick, John (William) Lund, Erin Nicole Coenen