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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41763

Water quality, instream habitat, and the distribution of suckers in the upper Lost River watershed of Oregon and California, summer 2018

Executive SummaryEndangered Lost River (Deltistes luxatus) and shortnose (Chasmistes brevirostris) suckers primarily use lotic habitats during the spring spawning season in the Upper Klamath Lake watershed. However, summer-time surveys of the upper Lost River watershed in 1972, 1975 and 1989–90 indicated that adults of both endangered species use tributaries of Clear Lake Reservoir (hereafter: Cle
Authors
Barbara A. Martin, Summer M. Burdick, Stephen T. Staiger, Caylen M. Kelsey

Evaluation of movement and survival of juvenile steelhead (Oncorhynchus mykiss) and coho salmon (Oncorhynchus kisutch) in the Klickitat River, Washington, 2018–2019

A 2-year telemetry study was conducted April–July in 2018 and 2019 to evaluate migration behavior and survival of juvenile steelhead (Oncorhynchus mykiss) and coho salmon (O. kisutch) in the Klickitat River, Washington. A total of 612 natural-origin steelhead, collected in a smolt trap on the Klickitat River, were tagged, released, and monitored as they outmigrated through the lower 17 kilometers
Authors
Scott D. Evans, David S. Lindley, Tobias J. Kock, Amy C. Hansen, Russell W. Perry, Joseph S Zendt, Nicolas Romero

Development of demographic models to analyze populations with multi-year data—Using Agassiz’s Desert Tortoise (Gopherus agassizii) as a case study

We developed a model for analyzing multi-year demographic data for long-lived animals and used data from a population of Agassiz’s desert tortoise (Gopherus agassizii) at the Desert Tortoise Research Natural Area in the western Mojave Desert of California as a case study. The study area was 7.77 square kilometers and included two locations: inside and outside the fenced boundary. The wildlife-perm
Authors
Kristin H. Berry, Julie L. Yee

Pollinator communities vary with vegetation structure and time since management within regenerating timber harvests of the Central Appalachian Mountains

Native pollinator populations across the United States are increasingly threatened by a multitude of ecological stressors. Although the drivers behind pollinator population declines are varied, habitat loss/degradation remains one of the most important threats. Forested landscapes, where the impacts of habitat loss/degradation are minimized, are known to support robust pollinator populations in ea
Authors
Codey L. Mathis, Darin J. McNeil, Monica R. Lee, Christina M. Grozinger, David I. King, Clint R.V. Otto, Jeffery A. Larkin

Negligible evidence for detrimental effects of Leucocytozoon infections among Emperor Geese (Anser canagicus) breeding on the Yukon-Kuskokwim Delta, Alaska

Emperor Geese (Anser canagicus) are iconic waterfowl endemic to Alaska and adjacent areas of northeastern Russia that are considered to be near threatened by the International Union for Conservation. This species has been identified as harboring diverse viruses and parasites which have, at times, been associated with disease in other avian taxa. To better assess if disease represents a vulnerabili
Authors
Andrew M. Ramey, Raymond Bucheit, Brian D. Uher-Koch, John Reed, M. Andreina Pacheco, Ananias Escalante, Joel Schmutz

Insect pathogenic fungi for biocontrol of plague vector fleas: A review

Bubonic plague is a lethal bacterial disease of great historical importance. The plague organism, Yersinia pestis, is primarily transmitted by fleas (Siphonaptera). In natural settings, where its range expands, Y. pestis resides in association with wild rodents and their fleas (sylvatic plague). While chemical insecticides are used against plague vector fleas, biological approaches have not been a
Authors
David A. Eads, Stefan Jaronski, Dean E. Biggins, Jeffrey Wimsatt

Marine distribution and foraging habitat highlight potential threats at sea for Endangered Bermuda Petrel Pterodroma cahow

Marine spatial planning relies on detailed spatial information of marine areas to ensure effective conservation of species. To enhance our understanding of marine habitat use by the highly pelagic Bermuda petrel Pterodroma cahow, we deployed GPS tags on 6 chick-rearing adults in April 2019 and constructed a habitat suitability model using locations classified as foraging to explore functional resp
Authors
André F Raine, Carina Gjerdrum, Isabeau Pratte, Jeremy Madeiros, Jonathan J. Felis, Josh Adams

Changes in forest connectivity from beech bark disease in Pictured Rocks National Lakeshore in the Upper Peninsula of Michigan

Within the forests of Pictured Rocks National Lakeshore, biologists are trying to understand the effects beech bark disease has on wildlife species, especially species that need forest connectivity to thrive. This project used aerial imagery collected in 2005, shortly after beech bark disease infestation, and satellite imagery from 2018. The 2018 imagery represents present day conditions and was u
Authors
Stephanie R. Sattler

Coalescent methods reconstruct contributions of natural colonization and stocking to origins of Michigan inland Cisco (Coregonus artedi)

Fish population structure in previously glaciated regions is often influenced by natural colonization processes and human-mediated dispersal, including fish stocking. Endemic populations are of conservation interest because they may contain rare and unique genetic variation. While coregonines are native to certain Michigan inland lakes, some were stocked with fish from Great Lakes sources, calling
Authors
Jared J. Homola, John D Robinson, Jeannette Kanefsky, Wendylee Stott, Gary Whelan, Kim T Scribner

An experimental evaluation of the efficacy of imaging flow cytometry (FlowCam) for detecting invasive Dreissened and Corbiculid bivalve veligers

Zebra (Dreissena polymorpha) and quagga (D. bugensis) mussels, first introduced from central Asia into the Great Lakes of North America in the late 1980s, have crossed the continental divide and more recently spread across western North America. At the same time, several new technologies have been developed for the early detection of dreissenids, including the FlowCam, a digital imaging-in-flow in
Authors
Whitney Hassett, Julie Zimmerman, Gretchen Rollwagen-Bollens, Stephen M. Bollens, Timothy D. Counihan

Nonlinear shifts in infectious rust disease due to climate change

Range shifts of infectious plant disease are expected under climate change. As plant diseases move, emergent abiotic-biotic interactions are predicted to modify their distributions, leading to unexpected changes in disease risk. Evidence of these complex range shifts due to climate change, however, remains largely speculative. Here, we combine a long-term study of the infectious tree disease, whit
Authors
Joan Dudney, Claire Willing, Adrian Das, Andrew M. Latimer, Jonathan C B Nesmith, John J. Battles

Thyroid disruption and oxidative stress in American kestrels following embryonic exposure to the alternative flame retardants, EHTBB and TBPH

Brominated flame retardant chemicals, such as 2-ethylhexyl-2,3,4,5-tetrabromobenzoate (EHTBB) (CAS #: 183658–27-7) and bis(2-ethylhexyl)-2,3,4,5-tetrabromophthalate (TBPH) (CAS #: 26040–51-7), have been detected in avian tissues and eggs from remote regions. Exposure to EHTBB and TBPH has been shown to cause oxidative stress and altered thyroid function in rodents and fish, yet no controlled studi
Authors
CHristopher Goodchild, Natalie K. Karouna-Renier, Paula F. P. Henry, Robert J. Letcher, Sandra L. Schultz, Catherine M. Maddox, Thomas Bean, Lisa E. Peters, Vince P. Palace, Kimberly J. Fernie