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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41763

The application of metacommunity theory to the management of riverine ecosystems

River managers strive to use the best available science to sustain biodiversity and ecosystem function. To achieve this goal requires consideration of processes at different scales. Metacommunity theory describes how multiple species from different communities potentially interact with local-scale environmental drivers to influence population dynamics and community structure. However, this body of
Authors
Christopher J. Patrick, Kurt E. Anderson, Brown L. Brown, Charles P. Hawkins, Anya N. Metcalfe, Parsa Saffarinia, Tadeu Siqueira, Christopher M. Swan, Jonathan D. Tonkin, Lester L. Yuan

Intraspecific variation mediates density dependence in a genetically diverse plant species

Interactions between neighboring plants are critical for biodiversity maintenance in plant populations and communities. Intraspecific trait variation and genome duplication are common in plant species and can drive eco-evolutionary dynamics through genotype-mediated plant–plant interactions. However, few studies have examined how species-wide intraspecific variation may alter interactions between
Authors
Andrii Zaiats, Matthew Germino, Marcelo D. Serpe, Bryce Richardson, Trevor Caughlin

Pedigree accumulation analysis: Combining methods from community ecology and population genetics for breeding adult estimation

Estimates of the number of successfully breeding adults (NS) in a population can predict levels of recruitment. However, assessments of NS are often difficult to obtain because encounters with adults are limited due to life-history characteristics, low abundance or other constraints associated with access to critical habitats. Alternatively, efforts to sample individuals at earlier ontogenetic sta
Authors
Nicholas Sard, Robert D. Hunter, Edward F. Roseman, Daniel B. Hayes, Robin L . DeBruyne, Kim T Scribner

Post-fire temporal trends in soil-physical and -hydraulic properties and simulated runoff generation: Insights from different burn severities in the 2013 Black Forest Fire, CO, USA

Burn severity influences on post-fire recovery of soil-hydraulic properties controlling runoff generation are poorly understood despite the importance for parameterizing infiltration models. We measured soil-hydraulic properties of field-saturated hydraulic conductivity (Kfs), sorptivity (S), and wetting front potential (ψf) for four years after the 2013 Black Forest Fire, Colorado, USA at six sit
Authors
Brian A. Ebel, John A. Moody, Deborah A. Martin

Evidence for interannual persistence of infectious influenza A viruses in Alaska wetlands

Influenza A viruses (IAVs) deposited by wild birds into the environment may lead to sporadic mortality events and economically costly outbreaks among domestic birds. There is a paucity of information, however, regarding the persistence of infectious IAVs within the environment following deposition. In this investigation, we assessed the persistence of 12 IAVs that were present in the cloaca and/or
Authors
Andrew M. Ramey, Andrew B. Reeves, Benjamin Joel Lagassé, Vijay P. Patil, Laura E. Hubbard, Dana W. Kolpin, R. Blaine McCleskey, Deborah A. Repert, David E. Stallknecht, Rebecca L. Poulson

A protocol for modelling generalised biological responses using latent variables in structural equation models

In this paper we consider the problem of how to quantitatively characterize the degree to which a study object exhibits a generalized response. By generalized response, we mean a multivariate response where numerous individual properties change in concerted fashion due to some internal integration. In latent variable structural equation modeling (LVSEM), we would typically approach this situation
Authors
James B. Grace, Magdalena Steiner

Instrumental variable methods in structural equation models

Instrumental variable regression (RegIV) provides a means for detecting and correcting parameter bias in causal models. Widely used in economics, recently several papers have highlighted its potential utility for ecological applications. Little attention has thus far been paid to the fact that IV methods can also be implemented within structural equation models (SEMIV). In this paper I present the
Authors
James Grace

Conservation of northwestern and southwestern pond turtles: Threats, population size estimates, and population viability analysis

Accurate status assessments of long-lived, widely distributed taxa depend on the availability of long-term monitoring data from multiple populations. However, monitoring populations across large temporal and spatial scales is often beyond the scope of any one researcher or research group. Consequently, wildlife managers may be tasked with utilizing limited information from different sources to det
Authors
Stephanie Manzo, E. Griffin Nicholson, Devereux. Zachary, Robert N. Fisher, Christopher W. Brown, Peter A Scott, H. Bradley Shaffer

How to increase the supply of native seed to improve restoration success: The US native seed development process

With the United Nations Decade on Ecosystem Restoration, restoration of damaged ecosystems is turning into a global movement. Restoration actions that are not based on science and an understanding of ecosystem function can thwart desired restoration outcomes at best and cause further damage to ecosystems at worst. Restoration often includes revegetation using seed. Where we source seed for restora
Authors
Molly Lutisha Mccormick, Amanda N. Carr, Robert Massatti, Daniel E. Winkler, Patricia De Angelis, Peggy Olwell

Contemporary and historic dynamics of lake whitefish (Coregonus clupeaformis) eggs, larvae, and juveniles suggest recruitment bottleneck during first growing season

To determine if a survival bottleneck occurs in Lake Erie's lake whitefish (Coregonus clupeaformis) population and explore possible mechanisms responsible, we examined contemporary and historical dynamics of lake whitefish eggs, larvae and juveniles. Widespread spawning and low overwinter egg retention were observed in 2016–2018, however subsequent larval CPUE remained consistent with historical o
Authors
Z. Amidon, Robin DeBruyne, Edward F. Roseman, Christine Mayer

Extreme precipitation and flooding contribute to sudden vegetation dieback in a coastal salt marsh

Climate extremes are becoming more frequent with global climate change and have the potential to cause major ecological regime shifts. Along the northern Gulf of Mexico, a coastal wetland in Texas suffered sudden vegetation dieback following an extreme precipitation and flooding event associated with Hurricane Harvey in 2017. Historical salt marsh dieback events have been linked to climate extreme
Authors
Camille Stagg, Michael Osland, Jena A. Moon, Laura Feher, Claudia Laurenzano, Tiffany C. Lane, William Jones, Stephen Hartley

Towards building a sustainable future: Positioning ecological modelling for impact in ecosystems management

As many ecosystems worldwide are in peril, efforts to manage them sustainably require scientific advice. While numerous researchers around the world use a great variety of models to understand ecological dynamics and their responses to disturbances, only a small fraction of these models are ever used to inform ecosystem management. There seems to be a perception that ecological models are not usef
Authors
Don DeAngelis, Daniel Franco, Alan Hastings, Frank M. Hilker, Suzanne Lenhart, Frithjof Lutscher, Natalia Petrovskaya, Sergei Petrovskii, Rebecca C. Tyson