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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41763

Assessing the ecological functionality and integrity of natural ponds, excavated ponds and stormwater basins for conserving amphibian diversity

Wetlands provide ecological functionality by maintaining and promoting regional biodiversity supporting quality habitat for aquatic organisms. Globally, habitat loss, fragmentation and degradation due to increases in agricultural activities and urban development have reduced or altered geographically isolated wetlands, thus reducing biodiversity. The objective of this study was to assess the relat
Authors
Kelly L. Smalling, Sara E. Breitmeyer, John F. Bunnell, Kim J Laidig, Patrick Burritt, Marilyn Sobel, Jonathan Cohl, Michelle Hladik, Kristin M. Romanok, Paul M. Bradley

Historical floods and geomorphic change in the lower Little Colorado River during the late 19th to early 21st centuries

The Little Colorado River is a major tributary to the Colorado River with a confluence at the boundary between Marble and Grand Canyons within Grand Canyon National Park, Arizona. The bedrock gorge of the lower Little Colorado River is home to the largest known population of Gila cypha (humpback chub), an endangered fish endemic to the Colorado River Basin. Channel conditions might affect the spaw
Authors
Joel A. Unema, David J. Topping, Keith Kohl, Michael J. Pillow, Joshua J. Caster

COVID-19 influences on US recreational angler behavior

Recreational angling in the United States (US) is largely a personal hobby that scales up to a multibillion-dollar economic activity. Given dramatic changes to personal decisions and behaviors resulting from the COVID-19 pandemic, we surveyed recreational anglers across the US to understand how the pandemic may have affected their fishing motivations and subsequent activities. Nearly a quarter mil
Authors
Stephen R. Midway, Abigail Lynch, Brandon K. Peoples, Michael A. Dance, Rex Caffey

Comparative effects of energy-related saline wastewaters and sodium chloride on hatching, survival, and fitness-associated traits of two amphibian species

Salinity (sodium chloride [NaCl]) is a prevalent and persistent contaminant that negatively affects freshwater ecosystems. Although most studies focus on effects of salinity from road salts (primarily NaCl), high-salinity wastewaters from energy extraction (wastewaters) could be more harmful because they contain NaCl and other toxic components. Many amphibians are sensitive to salinity, and their
Authors
Brian J. Tornabene, Creagh Breuner, Blake R. Hossack

Genetic sequencing of Attwater's prairie chicken avian poxvirus and evaluation of its potential role in reticuloendotheliosis virus outbreaks

Efforts to breed Attwater's prairie chickens (APC; Tympanuchus cupido attwateri) in captivity to supplement wild populations of this endangered bird have been negatively affected by infections with Avipoxvirus and reticuloendotheliosis virus (REV). Because REV can be integrated into the genome of fowlpox virus (FPV) and may be transmitted in that manner, identifying the source of avipox disease in
Authors
Erik K. Hofmeister, Fiona Antigoni Georgousi, Melissa Lund, Pam Ferro, Joe Flanagan, Holly Haefele, Mike Morrow

Annual recurrences of viral hemorrhagic septicemia epizootics in age 0 Pacific herring Clupea pallasii Valenciennes, 1847

Throughout a 20 year biosurveillance period, viral hemorrhagic septicemia virus was isolated in low titers from only 6/7355 opportunistically sampled adult Pacific herring, reflecting the typical endemic phase of the disease when the virus persists covertly. However, more focused surveillance efforts identified the presence of disease hot spots occurring among juvenile life history stages from cer
Authors
Paul Hershberger, Theodore R. Meyers, Jacob L. Gregg, Maya Groner, Sophie Amanda Hall, Hiruni T. Jayasekera, Ashley MacKenzie, Abigail S. Neat, Ella N. Piatt, Kyle A. Garver

Strandlines from large floods on the Colorado River in Grand Canyon National Park, Arizona

Strandlines of peak-stage indicators (such as driftwood logs, woody debris, and trash) provide valuable data for understanding the maximum stage and extent of inundation during floods. A series of seven strandlines have been preserved along the Colorado River in Grand Canyon National Park, Arizona, USA. A survey and analysis of these strandlines was completed from the Colorado River at Lees Ferry,
Authors
Thomas A. Sabol, Ronald E. Griffiths, David J. Topping, Erich R. Mueller, Robert B. Tusso, Joseph E. Hazel

Replacement of the typical artedi form of Coregonus artedi in Lake Huron by endemic shallow-water Ciscoes, including putative hybrids

Various ecomorphs of shallow-water Cisco Coregonus artedi were the dominant fish planktivores in each of the Great Lakes until invasive species and over fishing resulted in extirpations and extinctions. In this paper we describe the present morphological diversity and distribution of shallow-water Ciscoes in each of Lake Huron’s three basins: the main basin, Georgian Bay, and North Channel. Typica
Authors
Randy L. Eshenroder, Yu-Chun Kao, Timothy P. O'Brien, Chris M. Olds, Chris L. Davis, Alexander T. Duncan

Adaptive two-stage inverse sampling design to estimate density, abundance, and occupancy of rare and clustered populations

Sampling rare and clustered populations is challenging because of the effort required to find rare units. Heuristically, a practitioner would prefer to discontinue sampling in areas where rare units of interest are apparently extremely sparse or absent. We take advantage of the characteristics of inverse sampling to adaptively inform practitioners when it is efficient to move on to sample new area
Authors
Mohammad Salehi, David R. Smith

Opportunities and challenges of macrogenetic studies

The rapidly emerging field of macrogenetics focuses on analysing publicly accessible genetic datasets from thousands of species to explore large-scale patterns and predictors of intraspecific genetic variation. Facilitated by advances in evolutionary biology, technology, data infrastructure, statistics and open science, macrogenetics addresses core evolutionary hypotheses (such as disentangling en
Authors
Deborah M. Leigh, Charles B. van Rees, Katie L Millette, Martin F Breed, Chloé Schmidt, Laura D. Bertola, Brian K. Hand, Margaret Hunter, Evelyn L. Jensen, Francine Kershaw, Libby Liggins, Gordon Luikart, Stéphanie Manel, Joachim Mergeay, Joshua M. Miller, Gernot Segelbacher, Sean M. Hoban, Ivan Paz-Vinas

Incorporating antenna detections into abundance estimates of fish

Autonomous passive integrated transponder (PIT) tag antennas are commonly used to detect fish marked with PIT tags but cannot detect unmarked fish, creating challenges for abundance estimation. Here we describe an approach to estimate abundance from paired physical capture and antenna detection data in closed and open mark-recapture models. Additionally, for open models, we develop an approach tha
Authors
Maria C. Dzul, Charles Yackulic, William L. Kendall, Dana L. Winkelman, Mary M Conner, Mike Yard

Response to “Connectivity and pore accessibility in models of soil carbon cycling”

Here we respond to Baveye and colleagues' recent critique of our PROMISE model, describing how this new framework significantly advances our understanding of soil spatial heterogeneity and its influence on organic matter transformations.
Authors
Bonnie G. Waring, Benjamin N. Sulman, Sasha C. Reed, A. Peyton Smith, Colin Averill, Courtney Ann Creamer, Daniela F. Cusack, Steven J. Hall, Julie D. Jastrow, Andrea Jilling, Kenneth M. Kemner, Markus Kleber, Xiao-Jun Allen Liu, Jennifer Pett-Ridge, Marjorie S. Schulz