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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41763

Incorporation of non-native species in the diets of cisco (Coregonus artedi) from eastern Lake Ontario

Cisco Coregonus artedi was once an important native fish in Lake Ontario; however, after multiple population crashes, the cisco stock has yet to recover to historic abundances. Rehabilitation of cisco in Lake Ontario is a fish community management objective, but the extent to which recent non-native species and pelagic food web changes have influenced cisco is not well understood. We described cis
Authors
Alexander Gatch, Brian C. Weidel, Dimitry Gorsky, Brian O'Malley, Michael Connerton, Jeremy Holden, Kristen T. Holeck, J.A. Goertzke, Curtis T. Karboski

Species-specific demographic and behavioral responses to food availability during migratory stopover

Understanding the effects of migratory stopover site conditions on both demographic rates and migratory behaviors is critical for interpreting changes in passage population sizes at stopover sites and predicting responses to future changes and conservation actions. We used a Bayesian formulation of the open robust design model to analyze mark-resight observations of three migratory shorebird speci
Authors
A. M. Tucker, Conor P. McGowan, James E. Lyons, A. Derose-Wilson, N. A. Clark

Experimental evaluation of spatial capture–recapture study design

A principal challenge impeding strong inference in analyses of wild populations is the lack of robust and long-term data sets. Recent advancements in analytical tools used in wildlife science may increase our ability to integrate smaller data sets and enhance the statistical power of population estimates. One such advancement, the development of spatial capture–recapture (SCR) methods, explicitly
Authors
Jillian Elizabeth Fleming, Evan H. Campbell Grant, Sean C Sterrett, Chris Sutherland

Plant growth and biocrust-fire interactions across five North American deserts

Biological soil crusts (biocrusts) are communities predominately comprised of lichens, bryophytes, fungi, algae, and cyanobacteria that form at the soil surface in dryland ecosystems worldwide. Biocrusts can influence the vascular plant community by altering surface hydrology, nutrient cycling, and the availability of microsites suitable for germination. Fire frequency has increased in many drylan
Authors
Ellie McCann, Sasha C. Reed, Pradip Saud, Robin H. Reibold, Armin J. Howell, Akasha M. Faist

Simulation of water-table and freshwater/saltwater interface response to climate-change-driven sea-level rise and changes in recharge at Fire Island National Seashore, New York

The fresh groundwater system at Fire Island National Seashore in New York is one of the natural resources that is most vulnerable to climate change; the various federally listed threatened or endangered species that live on Fire Island, including the piping plover, roseate tern shorebird, and seabeach amaranth may be affected by changes in the groundwater system. The U.S. Geological Survey, in coo
Authors
Paul E. Misut, Sarken Dressler

Belowground productivity varies by assessment technique, vegetation type, and nutrient availability in tidal freshwater forested wetlands transitioning to marsh

Wetlands along upper estuaries are characterized by dynamic transitions between forested and herbaceous communities (marsh) as salinity, hydroperiod, and nutrients change. The importance of belowground net primary productivity (BNPP) associated with fine and coarse root growth also changes but remains the dominant component of overall productivity in these important blue carbon wetlands. Appropria
Authors
Andrew From, Ken Krauss, Gregory Noe, N. Cormier, Camille Stagg, Rebecca Moss, Julie L. Whitbeck

A global dataset of inland fisheries expert knowledge

Inland fisheries and their freshwater habitats face intensifying effects from multiple natural and anthropogenic pressures. Fish harvest and biodiversity data remain largely disparate and severely deficient in many areas, which makes assessing and managing inland fisheries difficult. Expert knowledge is increasingly used to improve and inform biological or vulnerability assessments, especially in
Authors
Gretchen L. Stokes, Abigail Lynch, Simon Funge-Smith, John Valbo-Jørgensen, T. Douglas Beard, Benjamin S. Lowe, Jesse P. Wong, Samuel J. Smidt

Regeneration trends along climate gradients in Taxodium distichum forests of the southeastern United States

The development of relict vegetation at the edges of some ecosystems has taken place particularly in environments where the regeneration of foundational species is declining. As an important stage of regeneration in the Taxodium distichum, this study explored the relationship of cone volume and seed number across environmental gradients in the Mississippi River Alluvial Valley (MRAV) and northern
Authors
Beth Middleton, Ting Lei, Omag Villegas, Xiaohui Liu

Climate change vulnerability assessment for the California coastal national monument—Trinidad and Point Arena-Stornetta units

Executive SummaryThe California Coastal National Monument protects islets, reefs, and rock outcropping habitats in six onshore units, including the Trinidad and Point Arena-Stornetta Units.The California Coastal National Monument provides crucial habitat for resident and migratory species of seabirds, marine mammals, and invertebrates, which includes several federally listed threatened and endange
Authors
Karen M. Thorne, Chase M. Freeman, Kevin J. Buffington, Susan E.W. De La Cruz

Influence of filter pore size on composition and relative abundance of bacterial communities and select host-specific MST markers in coastal waters of southern Lake Michigan

Water clarity is often the primary guiding factor in determining whether a prefiltration step is needed to increase volumes processed for a range of microbial endpoints. In this study, we evaluate the effect of filter pore size on the bacterial communities detected by 16S rRNA gene sequencing and incidence of two host-specific microbial source tracking (MST) markers in a range of coastal waters fr
Authors
Muruleedhara Byappanahalli, Meredith B. Nevers, Dawn Shively, Cindy H Nakatsu, Julie L. Kinzelman, Mantha S. Phanikumar

The ten steps to responsible Inland fisheries in practice: Reflections from diverse regional case studies around the globe

Inland fisheries make substantial contributions to food security and livelihoods locally, regionally, and globally but their conservation and management have been largely overlooked by policy makers. In an effort to remedy this limited recognition, a cross-sectoral community of scientists, practitioners, and policy makers from around the world convened a high-level meeting in 2015 at the Food and
Authors
Steven J. Cooke, Elizabeth A. Nyboer, Abigail Bennett, Abigail J. Lynch, Dana M. Infante, Ian G. Cowx, Douglas Beard, Devin Bartley, Craig Paukert, Andrea J. Reid, Simon Funge-Smith, Edith Gondwe, Emmanuel Kaunda, John D. Koehn, Nicholas J. Souter, Gretchen L. Stokes, Leandro Castello, Nancy J. Leonard, Christian Skov, Soren Berg, William W. Taylor

Local climate adaptations in two ubiquitous Mojave Desert shrub species, Ambrosia dumosa and Larrea tridentata

Widely distributed species are often locally adapted to climate gradients across their ranges. But little is known about the patterns of intraspecific adaptation in desert shrubs.We examined the questions of local adaptation in multiple populations of two common shrub species of the winter-wet Mojave Desert in North America in a multiple common garden experiment. Plants were raised in the greenhou
Authors
Nathan A. Custer, Susan Schwinning, Lesley A. DeFalco, Todd C. Esque