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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41764

Virus shedding kinetics and unconventional virulence tradeoffs

Tradeoff theory, which postulates that virulence provides both transmission costs and benefits for pathogens, has become widely adopted by the scientific community. Although theoretical literature exploring virulence-tradeoffs is vast, empirical studies validating various assumptions still remain sparse. In particular, truncation of transmission duration as a cost of virulence has been difficult t
Authors
Andrew R. Wargo, Gael Kurath, Robert J. Scott, Benjamin Kerr

A customized framework for regional classification of conifers using automated feature extraction

Pinyon and juniper expansion into sagebrush ecosystems is one of the major challenges facing land managers in the Great Basin. Effective pinyon and juniper treatment requires maps that accurately and precisely depict tree location and degree of woodland development so managers can target restoration efforts for early stages of pinyon and juniper expansion. However, available remotely sensed layers
Authors
Cali L. Roth, Peter S. Coates, K. Benjamin Gustafson, Michael P. Chenaille, Mark A. Ricca, Erika Sanchez-Chopitea, Michael L. Casazza

Bridging the research-implementation gap in avian conservation with translational ecology

The recognized gap between research and implementation in avian conservation can be overcome with translational ecology, an intentional approach in which science producers and users from multiple disciplines work collaboratively to co-develop and deliver ecological research that addresses management and conservation issues. Avian conservation naturally lends itself to translational ecology because
Authors
Sarah P. Saunders, Joanna X. Wu, Elizabeth A. Gow, Evan A. Adams, Brooke L. Bateman, Trina Bayard, Stephanie Beilke, Ashley A. Dayer, Auriel M.V. Fournier, Kara Fox, Christoper Hamilton, Patricia J. Heglund, Susannah B. Lerman, Nicole L. Michel, Eben H. Paxton, Çağan H. Şekercioğlu, Melanie A. Smith, Wayne E. Thogmartin, Mark S Woodrey, Charles van Riper

Plasma metabolite indices are robust to extrinsic variation and useful indicators of foraging habitat quality in Lesser Scaup

Energy acquisition and storage are important for survival and fecundity of birds during resource-limited periods such as spring migration. Plasma-lipid metabolites (i.e. triglyceride [TRIG], β-hydroxybutyrate [BOHB]) have been used to index changes in lipid stores and, thus, have utility for assessing foraging habitat quality during migration. However, such an index may be affected by energetic ma
Authors
Eric J. Smith, Michael J. Anteau, Heath M. Hagy, Christopher N. Jacques

Understanding constraints on submersed vegetation distribution in a large, floodplain river: The role of water level fluctuations, water clarity and river geomorphology

Aquatic vegetation is a key component of large floodplain river ecosystems. In the Upper Mississippi River System (UMRS), there is a long-standing interest in restoring aquatic vegetation in areas where it has declined or disappeared. To better understand what constrains vegetation distribution in large river ecosystems and inform ongoing efforts to restore submersed aquatic vegetation (SAV), we d
Authors
Alicia Carhart, John Kalas, James T. Rogala, Jason J. Rohweder, Deanne C. Drake, Jeffrey N. Houser

Pathology of Lagovirus europaeus GI.2/RHDV2/b (rabbit hemorrhagic disease virus 2) in native North American lagomorphs

Rabbit hemorrhagic disease, a notifiable foreign animal disease in the US, was reported for the first time in wild native North American lagomorphs in April 2020 in the southwestern US. Affected species included the desert cottontail (Sylvilagus audubonii), mountain cottontail (Sylvilagus nuttallii), black-tailed jackrabbit (Lepus californicus), and antelope jackrabbit (Lepus alleni). Desert cotto
Authors
Julia S. Lankton, Susan Knowles, Saskia Keller, Valerie I. Shearn-Bochsler, Hon S. Ip

Legacy contaminant-stable isotope-age relationships in Lake Ontario year-class Alewife (Alosa pseudoharengus)

Alewife (Alosa pseudoharengus) are the preferred prey species of the top piscivore predators in the Lake Ontario food web and are an essential constituent in the bioaccumulation of persistent organic contaminants. Year-class samples collected in 2016 represent the alewife age ranges of 2015 (Age-01) sequentially dating back to 2008 (Age-08). The most abundant contaminant measured in Lake Ontario a
Authors
James J. Pagano, James J. Garner, Brian C. Weidel, Daryl J. McGoldrick, Maureen G. Walsh, Thomas M. Holsen

TrendPowerTool: A lookup tool for estimating the statistical power of a monitoring program to detect population trends

A simulation-based power analysis can be used to estimate the sample sizes needed for a successful monitoring program, but requires technical expertise and sometimes extensive computing resources. We developed a web-based lookup app, called TrendPowerTool (https://www.usgs.gov/apps/TrendPowerTool/), to provide guidance for ecological monitoring programs when resources are not available for a simul
Authors
Emily L. Weiser, James E. Diffendorfer, Laura Lopez-Hoffman, Darius J. Semmens, Wayne E. Thogmartin

Survival and growth of suckers in mesocosms at three locations within Upper Klamath Lake, Oregon, 2018

Executive SummaryDue to high mortality in the first year or two of life, Lost River (Deltistes luxatus sp.) and Shortnose suckers (Chasmistes brevirostris sp.) in Upper Klamath Lake, Oregon rarely reach maturity. In 2015, the U.S. Fish and Wildlife Service began the Sucker Assisted Rearing Program (SARP) to improve early life survival before releasing the fish back into Upper Klamath Lake. Surviva
Authors
Summer M. Burdick, Carla M. Conway, Carl O. Ostberg, Ryan J. Bart, Diane G. Elliott

Using next generation sequencing of alpine plants to improve fecal metabarcoding diet analysis for Dall’s sheep

ObjectivesDall’s sheep (Ovis dalli dalli) are important herbivores in the mountainous ecosystems of northwestern North America, and recent declines in some populations have sparked concern. Our aim was to improve capabilities for fecal metabarcoding diet analysis of Dall’s sheep and other herbivores by contributing new sequence data for arctic and alpine plants. This expanded reference library wil
Authors
Kelly E. Williams, Damian M. Menning, Eric J. Wald, Sandra L. Talbot, Kumi L. Rattenbury, Laura R. Prugh

Daily patterns of river herring (Alosa spp.) spawning migrations: Environmental drivers and variation among coastal streams in Massachusetts

The timing of life history events in many plants and animals depends on the seasonal fluctuations of specific environmental conditions. Climate change is altering environmental regimes and disrupting natural cycles and patterns across communities. Anadromous fishes that migrate between marine and freshwater habitats to spawn are particularly sensitive to shifting environmental conditions and thus
Authors
Henry Legett, Adrian Jordaan, Allison H. Roy, John Sheppard, Marcelo Somos-Valenzuela, Michelle Staudinger

Measuring adrenal and reproductive hormones in hair from southern Beaufort Sea polar bears (Ursus maritimus)

Polar bears (Ursus maritimus) use sea ice to access marine mammal prey. In Alaska’s Southern Beaufort Sea, the declining availability of sea ice habitat in summer and fall has reduced opportunities for polar bears to routinely hunt on the ice for seals, their primary prey. This reduced access to prey may result in physiological stress with subsequent potential consequences to reproductive function
Authors
Marilize Van der Walt, Lorin Neuman-Lee, Patricia Terletzky, Todd C. Atwood, Eric Gese, Susannah French