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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41764

Identifying information gaps in predicting winter foraging habitat for juvenile Gulf Sturgeon

The Gulf Sturgeon Acipenser oxyrinchus desotoi is an anadromous species that inhabits Gulf of Mexico coastal waters from Louisiana to Florida and is listed as threatened under the U.S. Endangered Species Act. Seasonal cues (e.g., freshwater discharge) determine the timing of spawning and migration and may influence the availability of critical habitat during winter months in six estuaries. Large i
Authors
Leah L Dale, James P. Cronin, Virginia Brink, Blair Tirpak, John M. Tirpak, William E. Pine

Assessing the hydrologic and physical conditions of a drainage basin

An assessment of a drainage basin and its stream corridor will provide the data and information needed to understand current biophysical conditions and trends. Developing an understanding of the drivers of change is the next essential step for restoration success (Osterkamp and Toy, 1997; Corenbilt et al., 2007; Briggs and Osterkamp, 2003), Shields et al. 2003; Osterkamp et al., 2011). Establishin
Authors
Waite Osterkamp, Mark K. Briggs, David Dean, Alfredo Rodriquez

Snowpack signals in North American tree rings

Climate change has contributed to recent declines in mountain snowpack and earlier runoff, which in turn has intensified hydrological droughts in western North America. Climate model projections suggest that continued and severe snowpack reductions are expected over the 21st century, with profound consequences for ecosystems and human welfare. Yet the current understanding of trends and variabilit
Authors
Bethany L. Coulthard, Kevin J. Anchukaitis, Gregory T. Pederson, Edward R Cook, Jeremy Littell, Dan J. Smith

Sentinel coyote pathogen survey to assess declining black-footed ferret (Mustela nigripes) population in South Dakota, USA

As part of the national recovery effort, endangered black-footed ferrets (Mustela nigripes) were reintroduced to the Cheyenne River Sioux Reservation in South Dakota, US in 2000. Despite an encouraging start, numbers of ferrets at the site have declined. In an effort to determine possible causes of the population decline, we undertook a pathogen survey in 2012 to detect exposure to West Nile virus
Authors
Krysten L. Schuler, Michael Claymore, Hannah Schnitzler, Edward Dubovi, Tonie E. Rocke, Michael J. Perry, Dwight Bowman, Rachel Abbott

Hydrogeomorphological controls on reach‐scale distributions of cichlid nest sites in a small neotropical river

The Cichlidae are among the most diversified families of fish in the Neotropics and represent an important component of aquatic biodiversity. Understanding cichlid nest‐site selection is important for assemblages facing uncertain futures due to species invasions and environmental change. This information could be used to predict how inter‐ and intraspecific competition for reproductive space may a
Authors
Emily A. Buege, Peter C. Esselman, Sarah J. Praskievicz

Development of genetic baseline information to support the conservation and management of wild Brook Trout in North Carolina

Following centuries of declines, there is growing interest in conserving extant wild populations and reintroducing Brook Trout (Salvelinus fontinalis) populations of native ancestry. A population genetic baseline can enhance conservation outcomes and promote restoration success. Consequently, it is important to document existing patterns of genetic variation across the landscape and translate thes
Authors
David C. Kazyak, Barbara A. Lubinski, Jacob M Rash, Thomas C Johnson, Timothy L. King

A global perspective on the influence of the COVID-19 pandemic on freshwater fish biodiversity

The COVID-19 global pandemic and resulting effects on the economy and society (e.g., sheltering-in-place, alterations in transportation, changes in consumer behaviour, loss of employment) have yielded some benefits and risks to biodiversity. Here, we considered the ways the COVID-19 pandemic has influenced (or may influence) freshwater fish biodiversity (e.g., richness, abundance). In many cases,
Authors
Steve J. Cooke, William M. Twardek, Abigail Lynch, Ian G. Cowx, Julian D. Olden, Simon Funge-Smith, Kai Lorenzen, Robert Arlinghaus, Yushen Chen, Olaf L. F. Weyl, Elizabeth A. Nyboer, Paulo S. Pompeu, Stephanie M. Carlson, John D. Koehn, Adrian C. Pinder, Rajeev Raghavan, Sui C. Phang, Aaron A. Koning, William W. Taylor, Devin M. Bartley, J. Robert Britton

Strategic habitat conservation for beach mice: Estimating management scenario efficiencies

The Perdido Key beach mouse (Peromyscus polionotus trissyllepsis), Choctawhatchee beach mouse (P. p. allophrys), and St. Andrew beach mouse (P. p. peninsularis) are 3 federally endangered subspecies that inhabit coastal dunes of Alabama and Florida, USA. Conservation opportunities for these subspecies are limited and costly. Consequently, well‐targeted efforts are required to achieve their downlis
Authors
James P. Cronin, Blair Tirpak, Leah L Dale, Virginia E Robenski, John M. Tirpak, Bruce G. Marcot

Fish out of water: Insights from a case study of a highly social animal that failed the mirror self-recognition test

Mirror self-recognition (MSR) tests have been conducted with a variety of species with the aim of examining whether subject animals have the capacity for self-awareness. To date, the majority of animals that have convincingly passed are highly social mammals whose wild counterparts live in complex societies, though there is much debate concerning what constitutes passing and what passing means in
Authors
Shannon Barber-Meyer, Lori J. Schmidt

Editorial: Plant-soil interactions under changing climate

The health and well-being of plants and soil is crucial for all life on Earth. It is well-known that vegetation cover follows climatic zones, and plants respond to climatic drivers such as temperature and precipitation (Seddon et al., 2016; Kattge et al., 2020). It is also well-known that plant health depends on the properties and health of the soil (Ephrath et al., 2020), and that strong interact
Authors
Sanna Sevanto, Charlotte Grossiord, Tamir Klein, Sasha C. Reed

Evidence for continental-scale dispersal of antimicrobial resistant bacteria by landfill-foraging gulls

Anthropogenic inputs into the environment may serve as sources of antimicrobial resistant bacteria and alter the ecology and population dynamics of synanthropic wild animals by providing supplemental forage. In this study, we used a combination of phenotypic and genomic approaches to characterize antimicrobial resistant indicator bacteria, animal telemetry to describe host movement patterns, and a
Authors
Christina Ahlstrom, Mariëlle L. van Toor, Hanna Woksepp, Jeffrey C Chandler, John Reed, Andrew B. Reeves, Jonas Waldenström, Alan B. Franklin, David C. Douglas, Jonas Bonnedahl, Andrew M. Ramey

Effective population size remains a suitable, pragmatic indicator of genetic diversity for all species, including forest trees

Fady & Bozzano highlight some challenges to a proposed Convention on Biological Diversity (CBD) indicator of genetic diversity based on effective population size, Ne (Fady and Bozzano, 2020; Hoban et al., 2020). We appreciate the thoughtful debate and concur that genetic diversity indicators must be reliable and scalable. We fully agree that “genetic diversity should be better considered in the CB
Authors
Sean M. Hoban, Ivan Paz-Vinas, Sally Aitken, Laura D. Bertola, Martin F Breed, Michael W. Bruford, W. Chris Funk, Catherine E. Grueber, Myriam Heuertz, Paul A. Hohenlohe, Margaret Hunter, Rodolfo Jaffé, Margarida Lopes Fernandes, Joachim Mergeay, Farideh Moharrek, David O’Brien, Gernot Segelbacher, Cristiano Vernesi, Lisette Waits, Linda Laikre