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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41771

Direct and indirect effects of a keystone engineer on a shrubland-prairie food web

Keystone engineers are critical drivers of biodiversity throughout ecosystems worldwide. Within the North American Great Plains, the black‐tailed prairie dog is an imperiled ecosystem engineer and keystone species with well‐documented impacts on the flora and fauna of rangeland systems. However, because this species affects ecosystem structure and function in myriad ways (i.e., as a consumer, a pr
Authors
Courtney Duchardt, Lauren M. Porensky, Ian Pearse

Annotated bibliography of scientific research on greater sage-grouse published from 2015 to 2019

The greater sage-grouse (Centrocercus urophasianus; hereafter GRSG) has been a focus of scientific investigation and management action for the past two decades. The 2015 U.S. Fish and Wildlife Service listing determination of “not warranted” was in part due to a large-scale collaborative effort to develop strategies to conserve GRSG populations and their habitat and to reduce threats to both. New
Authors
Sarah K. Carter, Robert S. Arkle, Heidi L. Bencin, Benjamin R. Harms, Daniel J. Manier, Aaron N. Johnston, Susan L. Phillips, Steven E. Hanser, Zachary H. Bowen

Integrating climate change considerations into natural resource planning—An implementation guide

Executive SummaryClimate change vulnerability assessments and associated adaptation strategies and actions connect existing climate science with possible effects on natural resources and highlight potential responses. However, these assessments, which are commonly generated for large regional areas, suggest management options in general terms without guidance for choosing among strategies and acti
Authors
Jessi Kershner, Andrea Woodward, Alicia Torregrosa

Case Study 4: NABat acoustic monitoring allows inferences about bat populations at multiple scales

North American bats face unprecedented risks from continuing and emerging threats including white-nose syndrome, wind energy development, and habitat loss. Many species of bats are thought to be recently experiencing unparalleled population declines unlike any previously observed (O’Shea et al. 2016). The North American Bat Monitoring Program (NABat) was conceived to better understand the true ec
Authors
Brian Reichert, Thomas J. Rodhouse, Susan Loeb, Jason Rae

Photosynthetic and respiratory acclimation of understory shrubs in response to in situ experimental warming of a wet tropical forest

Despite the importance of tropical forests to global carbon balance, our understanding of how tropical plant physiology will respond to climate warming is limited. In addition, the contribution of tropical forest understories to global carbon cycling is predicted to increase with rising temperatures, however, in situ warming studies of tropical forest plants to date focus only on upper canopies. W
Authors
Kelsey R. Carter, Tana E Wood, Sasha C. Reed, Elsa C. Schwartz, Madeline B. Reinsel, Xi Yang

An ecological and conservation perspective

Natural ecosystems are facing unprecedented threats which directly threaten human well-being through decreases in critical ecosystem services (IPBES 2019). The top five drivers causing the largest global impacts to biodiversity and ecosystem services include: 1) changes in land and sea use; 2) direct exploitation of organisms; 3) climate change; 4) pollution, and 5) invasive alien species (IPBES 2
Authors
C. LeAnn White, Julia S. Lankton, Daniel P. Walsh, Jonathan M. Sleeman, Craig Stephen

Assessing the efficacy of protected and multiple-use lands for bird conservation in the U.S.

Setting land aside has long been a primary approach for protecting biodiversity; however, the efficacy of this approach has been questioned. We examined whether protecting lands positively influences bird species in the U.S., and thus overall biodiversity. We used the North American Breeding Bird Survey and Protected Areas Database of the U.S. to assess effects of protected and multiple-use lands
Authors
L. Lynnette Dornak, Jocelyn L. Aycrigg, John R. Sauer, Courtney J. Conway

Comparative genomics and genomic epidemiology of mycobacterium avium subsp. paratuberculosis strains

Two phenotypically distinct strains of Mycobacterium avium subsp. paratuberculosis (MAP) were recognized in the 1930s but it was not until the introduction of restriction endonuclease analysis (REA) in the mid-1980s that these two strains, MAP-C and MAP-S, could be distinguished genetically. Since then, a plethora of molecular typing techniques has been applied to MAP isolates (reviewed by Li et a
Authors
Karen Stevenson, Christina Ahlstrom

The Everglades Depth Estimation Network (EDEN) surface-water interpolation model, version 3

The Everglades Depth Estimation Network (EDEN) is an integrated network of water-level gages, interpolation models that estimate daily water-level data at ungaged locations, and applications that generate derived hydrologic data across the freshwater part of the Greater Everglades landscape. Version 3 (V3) of the EDEN interpolation surface-water model is the most recent update, replacing the versi
Authors
Saira Haider, Eric Swain, James Beerens, Matthew D. Petkewich, Bryan McCloskey, Heather Henkel

Shifting food web structure during dam removal—Disturbance and recovery during a major restoration action

We measured food availability and diet composition of juvenile salmonids over multiple years and seasons before and during the world’s largest dam removal on the Elwha River, Washington State. We conducted these measurements over three sediment-impacted sections (the estuary and two sections of the river downstream of each dam) and compared these to data collected from mainstem tributaries not dir
Authors
Sarah A. Morley, Melissa M Foley, Jeffrey J. Duda, Mathew M Beirne, Rebecca L Paradis, Rachelle Carina Johnson, Michael L. McHenry, Mel Elofson, Earnest M Sampson, Randall E McCoy, Justin Stapleton, George R. Pess

The distribution of woody species in relation to climate and fire in Yosemite National Park, California, USA

BackgroundThe effects of climate on plant species ranges are well appreciated, but the effects of other processes, such as fire, on plant species distribution are less well understood. We used a dataset of 561 plots 0.1 ha in size located throughout Yosemite National Park, in the Sierra Nevada of California, USA, to determine the joint effects of fire and climate on woody plant species. We analyze
Authors
Jan W. van Wagtendonk, Peggy E Moore, Julie L. Yee, James A. Lutz

Differences in rhizosphere microbial communities between native and non‐native Phragmites australis may depend on stand density

Microorganisms surrounding plant roots may benefit invasive species through enhanced mutualism or decreased antagonism, when compared to surrounding native species. We surveyed the rhizosphere soil microbiome of a prominent invasive plant, Phragmites australis, and its co‐occurring native subspecies for evidence of microbial drivers of invasiveness. If the rhizosphere microbial community is import
Authors
Wesley A. Bickford, Donald R. Zak, Kurt P. Kowalski, Deborah E. Goldberg