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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41771

U.S. Geological Survey sagebrush ecosystem research annual report for 2020

The sagebrush (Artemisia spp.) ecosystem extends across 251,473 square miles over portions of 13 western States. Affected by multiple stressors, including interactions among fire, invasive plants, and human land uses, this ecosystem has experienced significant loss, fragmentation, and degradation of landscapes once dominated by sagebrush. In turn, wildlife populations have declined following these

Bisphenol A and 17α-ethinylestradiol-induced transgenerational gene expression differences in the brain–pituitary–testis axis of medaka, Oryzias latipes

Endocrine disrupting chemicals (EDCs), such as bisphenol A (BPA) and 17α-ethinylestradiol (EE2), can have far reaching health effects, including transgenerational abnormalities in offspring that never directly contacted either chemical. We previously reported reduced fertilization rates and embryo survival at F2 and F3 generations caused by 7-day embryonic exposure (F0) to 100 μg/L BPA or 0.05 μg/
Authors
Albert J. Thayil, Xuegeng Wang, Pooja Bhandari, Frederick S. vom Saal, Donald E. Tillitt, Ramji K. Bhandari

How and why is the timing and occurrence of seasonal migrants in the Gulf of Maine changing due to climate?

Plants and animals undergo certain recurring life-cycle events, such as migrations between summer and winter habitats or the annual blooming of plants. Known as phenology, the timing of these events is very sensitive to changes in climate (and changes in one species’ phenology can impact entire food webs and ecosystems). Shifts in phenology have been described as a “fingerprint” of the temporal an
Authors
Adrian Jordaan, Daniel Pendleton, Chris Sutherland, Michelle Staudinger

Forest bird trends within Haleakala National Park

In 2017, the comprehensive east Maui bird surveys allowed for an update in status and evaluation of trends in bird populations within Haleakalā National Park. This report describes a finer-scale analysis of the park lands, distinguishing between the upper Kīpahulu Valley plus adjacent high-elevation areas compared to the rest of the park. I report abundance estimates and assess trends for six nati
Authors
Kevin W. Brinck

Wildfire risk and hazardous fuel reduction treatments along the US-Mexico border: A review of the science (1985-2019)

The ecosystems along the border between the United States and Mexico are at increasing risk to wildfire due to interactions among climate, land-use, and fuel loads. A wide range of fuel treatments have been implemented to mitigate wildfire and its threats to valued resources, yet we have little information about treatment effectiveness. To fill critical knowledge gaps, we reviewed wildfire risk an
Authors
Katherine M. Laushman, Seth M. Munson, Timothy N. Titus

Genetic diversity, population structure, and historical demography of a highly vagile and human‐impacted seabird in the Pacific Ocean: The red‐tailed tropicbird, Phaethon rubricauda

Many seabird breeding colonies have recovered from heavy anthropogenic disturbance after conservation actions. The widely distributed red‐tailed tropicbird, Phaethon rubricauda, was used as a model species to assess potential anthropogenic impacts on the genetic diversity of breeding colonies in the Pacific Ocean.Cytochrome c oxidase subunit I and control region sequences analyses were conducted a
Authors
Andrea I Varela, Katherina Brokordt, Stefanie M.H. Ismar‐Rebitz, Chris P Gaskin, Nicholas Carlile, Terence O'Dwyer, Josh Adams, Eric A. Vanderwerf, Guillermo Luna‐Jorquera

Improving the accessibility and transferability of machine learning algorithms for identification of animals in camera trap images: MLWIC2

Motion‐activated wildlife cameras (or “camera traps”) are frequently used to remotely and noninvasively observe animals. The vast number of images collected from camera trap projects has prompted some biologists to employ machine learning algorithms to automatically recognize species in these images, or at least filter‐out images that do not contain animals. These approaches are often limited by m
Authors
Michael A. Tabak, Mohammad S. Norouzzadeh, David W. Wolfson, Erica J. Newton, Raoul K. Boughton, Jacob S. Ivan, Eric Odell, Eric S. Newkirk, Reesa Y. Conrey, Jennifer L. Stenglein, Fabiola Iannarilli, John Erb, Ryan K. Brook, Amy J. Davis, Jesse S. Lewis, Daniel P. Walsh, James C Beasley, Kurt C. Vercauteren, Jeff Clune, Ryan S. Miller

Ambrosia beetle (Coleoptera: Curculionidae) communities and frass production in ʻŌhiʻa (Myrtales: Myrtaceae) infected with Ceratocystis (Microascales: Ceratocystidaceae) fungi responsible for Rapid ʻŌhiʻa Death

Rapid ʻŌhiʻa Death (ROD) is a deadly disease that is threatening the native Hawaiian keystone tree species, ʻōhiʻa lehua (Metrosideros polymorpha Gaudich). Ambrosia beetles (Curculionidae: Scolytinae) and their frass are hypothesized to play a major role in the spread of ROD, although their ecological niches and frass production within trees and across the landscape are not well understood. We cha
Authors
Kylle Roy, Kelly Jaenecke, Robert W. Peck

Distribution and abundance of Aquila chrysaetos (golden eagles) in East Contra Costa County Habitat Conservation Plan/Natural Community Conservation Plan area, California

The East Contra Costa County Habitat Conservation Plan/Natural Community Conservation Plan (HCP/NCCP) Preserve System was designed to protect and enhance ecological diversity and function in eastern Contra Costa County, California. Aquila chrysaetos (golden eagle) is a special-status species expected to benefit from biological goals of the HCP/NCCP. As part of a broader study, we estimated site-oc
Authors
J. David Wiens, Patrick S. Kolar, Douglas A. Bell

How plants influence resilience of salt marsh and mangrove wetlands to sea-level rise

This review evaluates the importance of plants and associated biological processes in determining the vulnerability of coastal wetlands to sea-level rise. Coastal wetlands occur across a broad sedimentary continuum from minerogenic to biogenic, providing an opportunity to examine the relative importance of biological processes in wetland resilience to sea-level rise. We explore how plants influenc
Authors
Donald R. Cahoon, Karen L. McKee, James Morris

A manipulative thermal challenge protocol for adult salmonids in remote field settings

Manipulative experiments provide stronger evidence for identifying cause-and-effect relationships than correlative studies, but protocols for implementing temperature manipulations are lacking for large species in remote settings. We developed an experimental protocol for holding adult Chinook salmon (Oncorhynchus tshawytscha) and exposing them to elevated temperature treatments. The goal of the e
Authors
Daniel S. Donnelly, Vanessa R. von Biela, Stephen D. McCormick, Sarah M. Laske, Michael P. Carey, Shannon C. Waters, Lizabeth Bowen, Randy J Brown, Sean Larson, Christian E. Zimmerman

Comparison of anadromous and landlocked Atlantic salmon genomes reveals signatures of parallel and relaxed selection across the northern hemisphere

Most Atlantic salmon (Salmo salar L.) populations follow an anadromous life cycle, spending early life in freshwater, migrating to the sea for feeding and returning to rivers to spawn. At the end of the last ice age ~10,000 years ago, several populations of Atlantic salmon became landlocked. Comparing their genomes to their anadromous counterparts can help identify genetic variation related to eit
Authors
Erik Kjaerner-Semb, Rolf B Edvardsen, Fernando Ayllon, Petra Vogelsang, Tomasz Furmanek, Carl Johan Rubin, Alexey E. Vaselov, Tom Ole Nilsen, Stephen D. McCormick, Craig R Primmer, Anna Wargelius