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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41758

Larval cisco and lake whitefish exhibit high distributional overlap within nursery areas

Coregonine fishes, including lake whitefish (Coregonus clupeaformis) and cisco (C. artedi), are socioecologically important in the Laurentian Great Lakes and of conservation concern, but the processes driving recruitment variability are unclear. In Lake Ontario, cisco and lake whitefish exhibit similar spawning behaviours and early life histories, but population trajectories are diverging. One hyp
Authors
Taylor A. Brown, Lars G. Rudstam, Jeremy P. Holden, Brian C. Weidel, Amanda Susanne Ackiss, Ann J. Ropp, Marc Chalupnicki, James E. McKenna, Suresh A. Sethi

Linking ecosystem processes to consumer growth rates: Gross primary productivity as a driver of freshwater fish somatic growth in a resource-limited river

Individual growth can exert strong controls on population dynamics and be constrained by resource acquisition rates. Difficulty in accurately quantifying resource availability over large spatial extents and at high temporal frequency often limits attempts to understand the extent that resources limit individual growth. Daily estimates of stream metabolism, including gross primary productivity (GPP
Authors
Lindsay Erika Hansen, Charles Yackulic, Brett G. Dickson, Bridget Deemer, Rebecca J. Best

Reproductive response of the Samoan swallowtail butterfly to variability in host plant and habitat characteristics

The Samoan swallowtail butterfly (Papilio godeffroyi) has become restricted to Tutuila Island, American Samoa. Factors driving its extirpation on other islands may be partly due to the availability and suitability of habitat, given the singular association we observed of P. godeffroyi with its host plant, Micromelum minutum. We expected that as a host plant specialist, P. godeffroyi might respond
Authors
Paul C. Banko, Robert W. Peck, Mark A. Schmaedick, Adam C. Miles, Niela Leifi, Kevin W. Brinck

Broadscale distribution, abundance and habitat associations of the invasive Asian clam (Corbicula fluminea) in the lower Columbia River, USA

The Asian clam, Corbicula fluminea, is an invasive freshwater bivalve that has established populations across the globe and is known to have deleterious effects on natural and human systems. Yet, despite being present in the Columbia River (CR) for nearly a century, little is known about this invader's basic biology and ecology in this large river system. Thus, we undertook a field study to assess
Authors
Salvador B. Robb-Chavez, Stephen M. Bollens, Gretchen Rollwagen-Bollens, Timothy D. Counihan

When are environmental DNA early detections of invasive species actionable?

Environmental DNA (eDNA) sampling provides sensitive early detection capabilities for recently introduced taxa. However, natural resource managers struggle with how to integrate eDNA results into an early detection rapid response program because positive eDNA detections are not always indicative of an eventual infestation. We used a structured decision making (SDM) framework to evaluate appropriat
Authors
Adam Sepulveda, Christine E. Dumoulin, Denise L. Blanchette, John Mcphedran, Colin Holme, Nathan Whalen, Maggie Hunter, Christopher M. Merkes, Catherine A. Richter, Matthew Neilson, Wesley M. Daniel, Devin Nicole Jones, David R. Smith

Susceptibility of Pallid Sturgeon to viral hemorrhagic septicemia virus genotype IVb

ObjectiveViral hemorrhagic septicemia virus (VHSV) is an aquatic rhabdovirus causing severe disease in freshwater and saltwater fish species. The susceptibility of endangered Pallid Sturgeon Scaphirhynchus albus to VHSV genotype IVb (VHSV-IVb) infection was investigated.MethodsAn in vitro assessment using two Pallid Sturgeon cell lines derived from skin and spleen tissue and in vivo evaluation of
Authors
Lacey R. Hopper, Jolene A. Glenn, Elizabeth MacConnell, James Winton, Eveline J. Emmenegger

A retrospective assessment of fuel break effectiveness for containing rangeland wildfires in the sagebrush biome

Escalated wildfire activity within the western U.S. has widespread societal impacts and long-term consequences for the imperiled sagebrush (Artemisia spp.) biome. Shifts from historical fire regimes and the interplay between frequent disturbance and invasive annual grasses may initiate permanent state transitions as wildfire frequency outpaces sagebrush communities’ innate capacity to recover. The
Authors
Cali L. Weise, Brianne E. Brussee, Douglas J. Shinneman, Peter S. Coates, Michele R. Crist, Cameron L. Aldridge, Julie A. Heinrichs, Mark A. Ricca

Elevated road segment (ERS) passage design may provide enhanced connectivity for amphibians, reptiles, and small mammals

Introduction: Designs for safe and effective road crossing structures for small animals are typically under-road microtunnels and culverts which have varying levels of effectiveness reported in the scientific literature. Many species, particularly migratory amphibians, may have limited ability to find and use passages if they are too far apart, resulting in substantial barrier effects.Methods: We
Authors
Cheryl S. Brehme, Stephanie Barnes, Brittany Ewing, Philip Robert Gould, Cassie Vaughan, Michael Hobbs, Charles Tornaci, Sarah Holm, Hanna Sheldon, Jon Fiutak, Robert N. Fisher

Comparison of historic to future without action (FWOA) land change

One of the primary purposes of the 2023 Coastal Master Plan Integrated Compartment Model (ICM) is to forecast potential changes in coastal wetland area under varying environmental and restoration scenarios. To validate the model performance, historical analyses of observed wetland changes are needed for comparison to hindcast model runs. To generate these historical analyses, this effort has analy
Authors
Brady Couvillion

A 37 K SNP array for the management and conservation of Golden Eagles (Aquila chrysaetos)

We describe the development of a custom 37 K Affymetrix Axiom myDesign single nucleotide polymorphism (SNP) array for a culturally and ecologically important apex predator, the golden eagle (Aquila chrysaetos). Using this SNP array, we performed population genomic analysis on 154 individuals of known natal localities and detected three genetic clusters that we designated as Taiga/High Arctic, Grea
Authors
Megan E. Judkins, Gary W. Roemer, Brian Millsap, Joseph G. Barnes, Bryan E. Bedrosian, Stephen L. Clarke, Robert Domenech, Garth Herring, Myles Lamont, Brian W. Smith, Dale W. Stahlecker, Matthew J. Stuber, Wesley C. Warren, Ronald A. Van Den Bussche

Ferruginous Hawk movements respond predictably to intra-annual variation but unexpectedly to anthropogenic habitats

Birds exhibit flexible movement responses to environmental variation across the annual cycle, and those responses can provide insight into potential impacts that environmental changes may have on these species. To understand year-round variation in space use by Ferruginous Hawks Buteo regalis, we tracked 12 birds breeding in southwestern Idaho, USA, using GPS telemetry collected over 207 bird-mont
Authors
Georgia H. Isted, Robert J. Thomas, Kevin S. Warner, Matthew J. Stuber, Ethan A. Ellsworth, Todd E. Katzner

Plague mitigation for prairie dog and black-footed ferret conservation: Degree and duration of flea control with 0.005% fipronil grain bait

Sylvatic plague, a primarily flea-borne zoonosis, is a significant threat to prairie dogs (Cynomys spp., PDs) and their specialized predators, endangered black-footed ferrets (Mustela nigripes, BFFs). Host-fed fipronil baits have proven effective in controlling fleas on PDs for the purposes of plague mitigation and BFF conservation. Currently, annual treatments are the norm. We tested the long-ter
Authors
David A. Eads, Travis. Livieri, Phillip Dobesh, John P. Hughes, Jason Fly, Holly Redmond, Eddie Childers, Matthew S. Schwarz, Dean E. Biggins