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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41758

Reduction of paraoxonase expression followed by inactivation across independent semiaquatic mammals suggests stepwise path to pseudogenization

Convergent adaptation to the same environment by multiple lineages frequently involves rapid evolutionary change at the same genes, implicating these genes as important for environmental adaptation. Such adaptive molecular changes may yield either change or loss of protein function; loss of function can eliminate newly deleterious proteins or reduce energy necessary for protein production. We prev
Authors
Allie M. Graham, Jerrica M. Jamison, Marisol Bustos, Charlotte Cournoyer, Alexa Michaels, Jason S. Presnell, Rebecca Richter, Daniel E. Crocker, Ari Fustukjian, Margaret Hunter, Lorrie D. Rea, Judit Marsillach, Clement E. Furlong, Wynn K. Meyer, Nathan L. Clark

Bringing the Nature Futures Framework to life: Creating a set of illustrative narratives of nature futures

To halt further destruction of the biosphere, most people and societies around the globe need to transform their relationships with nature. The internationally agreed vision under the Convention of Biological Diversity—Living in harmony with nature—is that “By 2050, biodiversity is valued, conserved, restored and wisely used, maintaining ecosystem services, sustaining a healthy planet and deliveri
Authors
América P. Durán, Jan J. Kuiper, A.P.D. Aguiar, W.W. Cheung, M.C. Diaw, G. Halouani, S. Hashimoto, M.A. Gasalla, G.D. Peterson, M.A. Schoolenberg, R. Abbasov, L.A. Acosta, D. Armenteras, F. Davila, M.A. Denboba, P.A. Harrison, K.A. Harhash, S. Karlsson-Viinkhuyzen, H. Kim, C. Lundquist, Brian W. Miller, S. Okayasu, R. Pichs-Madruga, J. Sathyapalan, A.K. Saysel, D. Yuan, L.M. Pereira

Human factors used to estimate and forecast water supply and demand in the Upper Colorado River Basin

Water availability is a result of complex interactions between regional water supply and demand and underlying environmental, institutional, and economic determinants. For this study, water availability is defined as “access to a specific quantity and quality of water at a point in time and space, for a specific use, recognizing the social and economic value of water across uses and institutions t
Authors
Nicole M. Herman-Mercer, Lucas Bair, Megan Hines, Diana Restrepo-Osorio, Veronica Romero, Aidan Lyde

Who spawns where? Temperature, elevation, and discharge differentially affect the distribution of breeding by six Pacific salmonids within a large river basin

Within the geographic range of salmonid fishes, many apparently suitable rivers and streams are used for reproduction by some species but not others. This is widely known but seldom addressed, as studies often examine factors determining the distribution of one or only a few species. We examined physical factors associated with the spawning distribution of six native Pacific salmonids (pink, chum,
Authors
Catherine S Austin, Christian E. Torgersen, Thomas P. Quinn

Laboratory-derived bioaccumulation kinetic parameters for four per- and polyfluoroalkyl substances in freshwater mussels

Although freshwater mussels are imperiled and identified as key conservation priorities, limited bioaccumulation information is available on these organisms for contaminants of emerging concern. In the present study we investigated the bioaccumulation of per- and polyfluoroalkyl substances (PFAS) in the model freshwater pond mussel Sagittunio subrostratus because mussels provide important ecosyste
Authors
Jeffery Steevens, Rebecca A. Consbrock, Eric Brunson, James L. Kunz, Erin L. Pulster, Rebekah S. Burket, Kevin M. Stroski, Jaylen L. Sims, Matt F. Simcik, Bryan W. Brooks

Isotopic niche of New Jersey terrapins suggests intraspecific resource partitioning, and little variability following a major hurricane

Diamondback terrapins (Malaclemys terrapin) are sexually dimorphic generalist turtles that inhabit salt marshes and estuaries along the Atlantic and Gulf coasts of the United States. On October 29th, 2012, Hurricane Sandy made landfall in New Jersey, USA, directly impacting terrapin populations inhabiting central and southern Barnegat Bay. To examine potential food web mediated impacts to the terr
Authors
Mathew Denton, Kristen Hart, John Wnek, Sarah A. Moss, Harold W. Avery

Techniques for restoring damaged Mojave and western Sonoran ecosystems, including those for threatened desert tortoises and Joshua trees

Ecological restoration has potential for contributing to conservation activities for threatened Mojave desert tortoises (Gopherus agassizii) and Joshua trees (Yucca brevifolia, Y. jaegeriana) and their broader ecosystems in the Mojave and western Sonoran deserts. To be effective, restoration actions deployed strategically need to halt and reverse habitat degradation, replenish or enhance resources
Authors
Scott R Abella, Kristin H. Berry, Stefanie Ferrazzano

A multi-level assessment of biological effects associated with mercury concentrations in smallmouth bass, Micropterus dolomieu

Total mercury (THg) was measured in muscle (fillet) and liver tissue of adult smallmouth bass Micropterus dolomieu collected at multiple sites in the Potomac and Susquehanna River drainages within the Chesapeake Bay watershed. Smallmouth bass in these drainages have experienced episodic mortality events, a high prevalence of skin lesions and reproductive endocrine disruption (intersex or testicula
Authors
Vicki S. Blazer, Heather L. Walsh, Adam Sperry, Brenna Raines, James Willacker, Collin Eagles-Smith

First investigations on lamprey responses to elevated total dissolved gas exposure and risk of gas bubble trauma

A flexible spill program in the federal Columbia River power system increased the total dissolved gas (TDG) water quality standards (i.e., the gas cap) from 120% to 125%. Spill is used to pass juvenile salmon (Oncorhynchus spp.) over dams, but it can generate elevated TDG, and exposed fish can develop gas bubble trauma (GBT) or experience mortality. Juvenile salmon are monitored for GBT through th
Authors
Theresa L. Liedtke, Kenneth Tiffan, Lisa K. Weiland, Brian K. Ekstrom

U.S. Geological Survey invasive carp strategic framework, 2023–27

U.S. Geological Survey (USGS) research has supported management of Hypophthalmichthys nobilis (bighead carp), Mylopharyngodon piceus (black carp), Ctenopharyngodon idella (grass carp), and H. molitrix (silver carp), hereafter referred to collectively as invasive carps, for over a decade. This strategic framework identifies thematic research areas to guide funding decisions for USGS invasive carp r
Authors
Duane Chapman, Jon Amberg, Robin Calfee, Enrika Hlavacek, Jon Hortness, P. Ryan Jackson, David C. Kazyak, Brent Knights, James Roberts

U.S. Geological Survey science to support wildlife disease management

Introduction The U.S. Geological Survey (USGS) serves a principal role in conducting wildlife disease outbreak investigations, surveillance, and ecological research to support management of diseases in free-ranging native wildlife. Approximately 60 percent of emerging human infectious diseases such as COVID-19, are zoonotic, meaning they are transmitted between animals and humans and 70 percent of
Authors
M. Camille Hopkins, Suzanna C. Soileau

Simulating the migration dynamics of juvenile salmonids through rivers and estuaries using a hydrodynamically driven enhanced particle tracking model

Juvenile salmonids migrate hundreds of kilometers from their natal streams to mature in the ocean. Throughout this migration, they respond to environmental cues such as local water velocities and other stimuli to direct and modulate their movements, often through heavily modified riverine and estuarine habitats. Management strategies in an uncertain future of climate change and altered land use re
Authors
Vamsi Krishna Sridharan, Doug Jackson, Andrew M. Hein, Russell Perry, Adam Pope, Noble Hendrix, Eric M. Danner, Steven T. Lindley