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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41758

The changing dynamics of highly pathogenic avian influenza H5N1: Next steps for management & science in North America

Highly pathogenic avian influenza virus (HPAIV) H5N1 was introduced in North America in late 2021 through trans-Atlantic pathways via migratory birds. These introductions have resulted in an unprecedented epizootic, a widespread disease event in animals, heavily affecting poultry, wild birds, and recently mammals. The North American incursions occurred during the largest epidemic season (2021–2022
Authors
Johanna Harvey, Jennifer M. Mullinax, Michael C. Runge, Diann Prosser

Nitrogen-bedrock interactions regulate multi-element nutrient limitation and sustainability in forests

Nutrient limitation of tree growth can intensify when nutrients are lost to forest harvest, creating challenges for forest growth and sustainability. Forest harvest accelerates nutrient loss by removing nutrient-containing biomass and by increasing nutrient leaching, shaping patterns of nutrient depletion that cause long-term shifts in nutrient limitation. Nitrogen most frequently limits tree grow
Authors
Kaveh G. Siah, Steven Perakis, Julie C. Pett-Ridge, Gregory van der Heijden

Potential effects of habitat change on migratory bird movements and avian influenza transmission in the East Asian-Australasian Flyway

Wild waterbirds, and especially wild waterfowl, are considered to be a reservoir for avian influenza viruses, with transmission likely occurring at the agricultural-wildlife interface. In the past few decades, avian influenza has repeatedly emerged in China along the East Asian-Australasian Flyway (EAAF), where extensive habitat conversion has occurred. Rapid environmental changes in the EAAF, esp
Authors
John Takekawa, Diann Prosser, Jeffery D. Sullivan, Shenglai Yin, Xinxin Wang, Geli Zhang, Xiangming Xiao

Trends, impacts, and cost of catastrophic and frequent wildfires in the sagebrush biome

Fire regimes in sagebrush (Artemisia spp.) ecosystems have been greatly altered across the western United States. Broad-scale invasion of non-native annual grasses, climate change, and human activities have accelerated wildfire cycles, increased fire size and severity, and lengthened fire seasons in many sagebrush ecosystems to the point that current wildfire-management practices and postfire rest
Authors
Michele R. Crist, Rick Belger, Kirk W. Davies, Dawn M. Davis, James Meldrum, Douglas J. Shinneman, Thomas E. Remington, Justin L. Welty, Kenneth E. Mayer

A cross inoculation experiment reveals Ophidiomyces ophiodiicola and Nannizziopsis guarroi can each infect both snakes and lizards

Host range and specificity are key concepts in the study of infectious diseases. However, both concepts remain largely undefined for many influential pathogens, including many fungi within the Onygenales order. This order encompasses reptile-infecting genera (Nannizziopsis, Ophidiomyces, and Paranannizziopsis) formerly classified as the Chrysosporium anamorph of Nannizziopsis vriesii (CANV). The r
Authors
Savannah L Gentry, Jeffrey M. Lorch, Julia S. Lankton, Anne Pringle

Climate change and pulse migration: Intermittent Chugach Inuit occupation of glacial fiords on the Kenai Coast, Alaska

For millennia, Inuit peoples of the Arctic and Subarctic have been challenged by the impacts of climate change on the abundance of key subsistence species. Responses to climate-induced declines in animal populations included switching to alternative food sources and/or migrating to regions of greater availability. We examine these dynamics for the Chugach Inuit (Sugpiat) people of southern coastal
Authors
Aron Crowell, Mayumi L. Arimitsu

Challenges and solutions for automated avian recognition in aerial imagery

Remote aerial sensing provides a non-invasive, large geographical-scale technology for avian monitoring, but the manual processing of images limits its development and applications. Artificial Intelligence (AI) methods can be used to mitigate this manual image processing requirement. The implementation of AI methods, however, has several challenges: (1) imbalanced (i.e., long-tailed) data distribu
Authors
Zhonqgi Miao, Stella X Yu, Kyle Lawrence Landolt, Mark D. Koneff, Timothy White, Luke J. Fara, Enrika Hlavacek, Bradley A. Pickens, Travis J. Harrison, Wayne M. Getz

Factors influencing egg thiamine concentrations of Lake Ontario lake trout: 2019–2020

In the Great Lakes region, thiamine deficiency is considered a recruitment bottleneck for lake trout Salvelinus namaycush and has been correlated with the consumption of non-native alewife Alosa pseudoharengus. While alewife, the most abundant forage fish in Lake Ontario, are the predominant prey for lake trout, they also consume benthic prey such as round goby Neogobius melanostomus. Because vari
Authors
Aaron Heisey, Christopher Osborne, Brian F. Lantry, Donald E. Tillitt, Jacques Rinchard

Assessment of potential recovery viability for Colorado Pikeminnow Ptychocheilus lucius in the Colorado River in Grand Canyon

Colorado Pikeminnow Ptychocheilus lucius, the Colorado River’s top native predatory fish, was historically distributed from the Gulf of California delta to the upper reaches of the Green, Colorado, and San Juan rivers in the Colorado River basin in the Southwestern US. In recent decades Colorado Pikeminnow population abundance has declined, primarily due to predation by warmwater nonnative fish an
Authors
Kimberly L. Dibble, Charles Yackulic, Kevin R. Bestgen, Keith B. Gido, Tildon Jones, Mark McKinstry, Doug Osmundson, Dale Ryden, Robert C. Schelly

Marmots do not drink coffee: Human urine contributions to the nitrogen budget of a popular national park destination

Reactive nitrogen (Nr) concentrations are higher than expected for mountain lakes in Rocky Mountain National Park, and for many years, high Nr concentrations have been attributed to atmospheric Nr deposition from regional and more distant emission sources, including combustion of fossil fuels and agricultural activities. Here, we estimated the contribution from a very local source, that of human u
Authors
Jill Baron, Timothy Weinmann, Varun Kirk Acharya, Caitlin Charlton, Koren Nydick, Scott Esser

Management of vampire bats and rabies: Past, present, and future

Rabies virus transmitted via the bite of common vampire bats (Desmodus rotundus) has surpassed canine-associated cases as the predominant cause of human rabies in Latin America. Cattle, the preferred prey of D. rotundus, suffer extensive mortality from vampire bat associated rabies, with annual financial losses estimated in the tens of millions of dollars. Organized attempts to manage or curtail v
Authors
Tonie E. Rocke, Daniel G. Streicker, Ariel Elizabeth Leon

The concept of land bridge marshes in the Mississippi River Delta and implications for coastal restoration

Louisiana has high coastal wetland loss rates due to natural processes such as subsidence and anthropogenic activities such as construction of river levees and dams, pervasive alteration of surface hydrology by local industries such as oil and gas, and navigation. With the exception of the Atchafalaya River discharge area, most of Louisiana's marsh coastline is retreating and coastal marshes are d
Authors
John W. Day, Robert R. Twilley, Angelina Freeman, Brady Couvillion, Tracy Quirk, Navid H. Jafari, Giulio Mariotti, Rachael Hunter, Charles Norman, G. Paul Kemp, John R. White, Ehab Meselhe