Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42179
Seasonal development of the coccidian parasite Goussia bayae and hepatobiliary histopathology in white perch Morone americana from Chesapeake Bay
The coccidium Goussia bayae infects the gallbladder and bile ducts of white perch Morone americana from Chesapeake Bay, USA. Seasonal changes in coccidian infections were analyzed from bile specimens of 1588 fish from the Choptank River during 2016-2018 using wet mount preparations with a Sedgwick-Rafter counting chamber. Histopathology of the gallbladder and liver was analyzed from a...
Authors
Mark A Matsche, Vicki S. Blazer, Patricia Mazik
Atrazine induced transgenerational reproductive effects in medaka (Oryzias latipes)
Atrazine is presently one of the most abundantly used herbicides in the United States, and a common contaminant of natural water bodies and drinking waters in high-use areas. Dysregulation of reproductive processes has been demonstrated in atrazine exposed fish, including alteration of key endocrine pathways on hypothalamic-pituitary-gonadal (HPG) axis. However, the potential for...
Authors
Jacob A. Cleary, Donald E. Tillitt, Fredrick S. vom Saal, Diane Nicks, Rachel Claunch, Ramji K. Bhandari
Sea-cliff bedstraw (Galium buxifolium) patterns and trends, 2005–14, on Santa Cruz and San Miguel Islands, Channel Islands National Park, California
Sea-cliff bedstraw (Galium buxifolium [Rubiaceae]) is a delicate dioecious subshrub endemic to Santa Cruz and San Miguel Islands, in the northern California Channel Islands. It was listed as endangered in 1997 under the Federal Endangered Species Act, threatened by soil loss, habitat alteration, and herbivory from more than a century of ranching land use. At the time of listing, there...
Authors
Kathryn McEachern, Katherine A. Chess, Karen Flagg, Kenneth G. Niessen
Non-native plants have greater impacts because of differing per-capita effects and non-linear abundance-impact curves
Invasive, non-native species can have tremendous impacts on biotic communities, where they reduce the abundance and diversity of local species. However, it remains unclear whether impacts of non-native species arise from their high abundance or whether each non-native individual has a disproportionate impact – i.e., a higher per-capita effect – on co-occurring species compared to impacts...
Authors
Ian Pearse, Helen Sofaer, David N. Zaya, Gregory Spyreas
Songbird feathers as indicators of mercury exposure: High variability and low predictive power suggest limitations
Although feathers are commonly used to monitor mercury (Hg) in avian populations, their reliability as a sampling matrix has not been thoroughly assessed for many avian species, including most songbirds (Order Passeriformes). To better understand relationships between total Hg (THg) concentrations in feathers and other tissues for birds in the thrush and sparrow families, we (1) examined...
Authors
Katherine E. Low, Danielle K. Ramsden, Allyson K. Jackson, Colleen Emery, W Douglas Robinson, Jim Randolph, Collin Eagles-Smith
The pathogenesis of H7 highly pathogenic avian influenza viruses in Lesser Scaup (Aythya affinis)
Waterfowl are the natural hosts of avian influenza virus (AIV), and through migration spread the virus worldwide. Most AIVs carried by wild waterfowl are low pathogenic strains; however, Goose/Guangdong/1996 lineage clade 2.3.4.4 H5 highly pathogenic (HP) AIV now appears to be endemic in wild birds in much of the Eastern Hemisphere. Most research efforts studying AIV pathogenicity in...
Authors
Christopher D. Stephens, Diann Prosser, Mary J. Pantin-Jackwood, Alicia Berlin, Erica Spackman
Spatially explicit modelling of floodplain forest succession: Interactions among flood inundation, forest successional processes, and other disturbances in the Upper Mississippi River floodplain, USA
Simulation models are often used to identify hydrologic regimes suitable for different riparian or floodplain tree species. However, most existing models pay little attention to forest successional processes or other disturbances that may interact with the hydrologic regime of river systems to alter forest dynamics in space and time. In this study, we introduce a flood disturbance module...
Authors
Nathan R. De Jager, Molly Van Appledorn, Timothy J. Fox, Jason J. Rohweder, Lyle J. Guyon, Andrew R. Meier, Robert J. Cosgriff, Benjamin J. Vandermyde
Knowing your limits: Estimating range boundaries and co-occurrence zones for two competing plethodontid salamanders
Understanding threats to species persistence requires knowledge of where species currently occur. We explore methods for estimating two important facets of species distributions, namely where the range limit occurs and how species interactions structure distributions. Accurate understanding of range limits is crucial for predicting range dynamics and shifts in response to interspecific...
Authors
Staci M. Amburgey, D. S. Miller, Adrianne Brand, Andrea M. Dietrich, Evan H. Campbell Grant
Intra‐Annual Changes in Waterborne Nanophyetus salmincola
An analysis of daily water samples collected from an index site on Big Soos Creek, Washington indicated intra‐annual differences in the concentrations of waterborne Nanophyetus salmincola. Waterborne concentrations, quantified as gene copies/L, peaked during the fall (October–November 2016), decreased to very low concentrations over the winter (January–March 2017), and then increased in...
Authors
Paul K Hershberger, Rachel Powers, Bonnie Besijn, J. Rankin, Mark A. Wilson, B Antipa, J Bjelland, Ashley Mackenzie, Jacob L. Gregg, Maureen Purcell
Salinity yield modeling of the Upper Colorado River Basin using 30-meter resolution soil maps and random forests
Salinity loading in the Upper Colorado River Basin (UCRB) costs local economies upwards of $300 million US dollars annually. Salinity source models have generally included coarse spatial data to represent non‐agriculture sources. We developed new predictive soil property and cover maps at 30 m resolution to improve source representation in salinity modeling. Salinity loading erosion risk...
Authors
Travis Nauman, Christopher Palumbo Ely, Matthew Miller, Michael Duniway
Context matters: Using reinforcement learning to develop human-readable, state-dependent outbreak response policies
The number of all possible epidemics of a given infectious disease that could occur on a given landscape is large for systems of real-world complexity. Furthermore, there is no guarantee that the control actions that are optimal, on average, over all possible epidemics are also best for each possible epidemic. Reinforcement learning (RL) has been used to develop machine-readable context...
Authors
William J. M. Probert, Sandya Lakkur, Christopher J. Fonnesbeck, Katriona Shea, Michael Runge, Michael J. Tildesley, Matthew J. Ferrari
Development of microsatellite loci for two New World vultures (Cathartidae)
ObjectiveUse next-generation sequencing to develop microsatellite loci that will provide the variability necessary for studies of genetic diversity and population connectivity of two New World vulture species.ResultsWe characterized 11 microsatellite loci for black vultures (Coragyps atratus) and 14 loci for turkey vultures (Cathartes aura). These microsatellite loci were grouped into 3...
Authors
Darren J Wostenberg, Jennifer A. Fike, Sara J. Oyler-McCance, Michael L. Avery, Antoinette J. Piaggio