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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41771

Evidence of spawning by lake trout Salvelinus namaycush on substrates at the base of large boulders in northern Lake Huron

Identification of lake trout spawning sites has focused on cobble substrates associated with bathymetric relief (e.g., ‘contour’ or ‘slope’ along reefs), but this ‘model’ may be narrow in scope. Previous telemetry work conducted near Drummond Island, USA, Lake Huron, identified egg presence in substrates at the base of large boulders (>1 m diameter); however, the extent of this phenomenon was unkn
Authors
Steve A. Farha, Thomas Binder, Charles R. Bronte, Daniel B. Hayes, John Janssen, J. Ellen Marsden, Stephen Riley, Charles C. Krueger

Optimal sampling design for spatial capture‐recapture

Spatial capture‐recapture (SCR) has emerged as the industry standard for estimating population density by leveraging information from spatial locations of repeat encounters of individuals. The precision of density estimates depends fundamentally on the number and spatial configuration of traps. Despite this knowledge, existing sampling design recommendations are heuristic and their performance rem
Authors
Gates Dupont, J. Andrew Royle, Muhammad Ali Nawaz, Chris Sutherland

Is there enough water? How bearish and bullish outlooks are linked to decision-maker perspectives on environmental flows

Policies that mandate environmental flows (e-flows) can be powerful tools for freshwater conservation, but implementation of these policies faces many hurdles. To better understand these challenges, we explored two key questions: (1) What additional data are needed to implement e-flows? and (2) What are the major socio-political barriers to implementing e-flows? We surveyed water and natural resou
Authors
Sean M. Wineland, Rachel Fovargue, Betsey York, Abigail Lynch, Craig Paukert, Thomas M. Neeson

Evaluating the impacts of foreshore sand and birds on microbiological contamination at a freshwater beach

Beaches along the Great Lakes shorelines are important recreational and economic resources. However, contamination at the beaches can threaten their usage during the swimming season, potentially resulting in beach closures and/or advisories. Thus, understanding the dynamics that control nearshore water quality is integral to effective beach management. There have been significant improvements in t
Authors
Ammar Saffaie, Chelsea J. Weiskerger, Meredith B. Nevers, Muruleedhara Byappanahalli, Mantha S. Phanikumar

Post-fire vegetation response in a repeatedly burned low-elevation sagebrush steppe protected area provides insights about resilience and invasion resistance

Sagebrush steppe ecosystems are threatened by human land-use legacies, biological invasions, and altered fire and climate dynamics. Steppe protected areas are therefore of heightened conservation importance but are few and vulnerable to the same impacts broadly affecting sagebrush steppe. To address this problem, sagebrush steppe conservation science is increasingly emphasizing a focus on resilien
Authors
Tom Rodhouse, Kathryn M. Irvine, Lisa Bowersock

Metabarcoding assays for the detection of freshwater mussels (Unionida) with environmental DNA

Freshwater mussels of the order Unionida are a widely distributed taxon that are important in maintaining freshwater ecosystems and are also highly imperiled throughout the world. Monitoring of mussel populations with environmental DNA (eDNA) is an attractive alternative to traditional methods because it is noninvasive and requires less labor and taxonomic knowledge from field personnel. We develo
Authors
Katy E. Klymus, Catherine A. Richter, Nathan Thompson, Jo Ellen Hinck, Jess W. Jones

Time-to-detection occupancy methods: Performance and utility for improving efficiency of surveys

Occupancy methods propelled the quantitative study of species distributions forward by separating the observation process, or the imperfect detectability of species, from the ecological processes of interest governing species distributions. Occupancy studies come at a cost, however: the collection of additional data to account for nondetections at sites where the species is present. The most commo
Authors
Brian J. Halstead, Jonathan P. Rose, Patrick M. Kleeman

Whitebark pine in the national parks of the Pacific states: An assessment of population vulnerability

Whitebark pine (Pinus albicaulis) is a long-lived tree found in high-elevation forests of western North America that is declining due to the non-native white pine blister rust (Cronartium ribicola) and climate-driven outbreaks of mountain pine beetle (Dendroctonus ponderosae; MPB). The National Park Service established a monitoring program for whitebark pine in seven parks, including Sequoia & Kin
Authors
Erik S Jules, Phillip J. van Mantgem, Benjamin G Iberle, Jonathan C B Nesmith, Regina M Rochefort

Ecology and management of plague in diverse communities of rodents and fleas

Plague originated in Asia as a flea-borne zoonosis of mammalian hosts. Today, the disease is distributed nearly worldwide. In western United States of America, plague is maintained, transmitted, and amplified in diverse communities of rodents and fleas. We examined flea diversity on three species of prairie dogs (Cynomys spp., PDs) and six species of sympatric small rodents in Montana and Utah, Un
Authors
David A. Eads, Dean E. Biggins, Kenneth L. Gage

Assessment of Ambystomatid salamander populations and their breeding habitats in the Delaware Water Gap National Recreation Area

This report presents abundance and occurrence data for three species of ambystomad salamanders (Ambystoma maculatum, A. jeffersonianum, and A. opacum) collected over a 3-year period (2000, 2001, and 2002) at 200 potentional breeding sies within the Delaware Water Gap National Recreation Area (DEWA). In addition, numerous measures of inpond, near-pond, and landscape attributes were measured and use
Authors
Craig D. Snyder, John A. Young, James T. Julian, Tim L. King, Shanon E. Julian

Warming and microbial uptake influence the fate of added soil carbon across a Hawai'ian weathering gradient

Tropical forest soils contain some of the largest carbon (C) stocks on Earth, yet the effects of warming on the fate of fresh C entering tropical soils are still poorly understood. This research sought to understand how the fate of fresh C entering soils is influenced by warming, soil weathering status, and C chemistry. We hypothesized that compounds that are quickly incorporated into microbial bi
Authors
Avishesh Neupane, Sasha C. Reed, Daniela F. Cusack

Influence of water temperature and biotic interactions on the distribution of westslope cutthroat trout (Oncorhynchus clarkii lewisi) in a population stronghold under climate change

Climate warming is expected to have substantial impacts on native trout across the Rocky Mountains, but there is little understanding of how these changes affect future distributions of co-occurring native fishes within population strongholds. We used mixed-effects logistic regression to investigate the role of abiotic (e.g., temperature) and biotic factors (bull trout presence, Salvelinus conflue
Authors
Kadie Heinle, Lisa A Eby, Clint C. Muhlfeld, Amber Steed, Leslie Jones, Vincent S. D'Angelo, Andrew R. Whiteley, Mark Hubblewhite