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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41771

It’s complicated…environmental DNA as a predictor of trout and char abundance in streams

The potential to provide inferences about fish abundance from environmental (e)DNA samples has generated great interest. However, the accuracy of these abundance estimates is often low and variable across species and space. A plausible refinement is the use of common aquatic habitat monitoring data to account for attributes that influence eDNA dynamics. We therefore evaluated the relationships bet
Authors
Adam Sepulveda, Robert Al-Chokhachy, Matthew Laramie, Kyle Crapster, Ladd Knotek, Brian T. Miller, Alexander V. Zale, David Pilliod

Cytology reveals diverse cell morphotypes and cellin-cell interactions in normal collector sea urchins Tripneustes gratilla

Echinoderms such as sea urchins are important in marine ecosystems, particularly as grazers, and unhealthy sea urchins can have important ecological implications. For instance, unexplained mortalities of Diadema antillarum in the Caribbean were followed by algal overgrowth and subsequent collapse of coral reef ecosystems. Unfortunately, few tools exist to evaluate echinoderm health, making managem
Authors
Thierry M. Work, Elena Millard, Daniela B. Mariani, Tina M. Weatherby, Robert Rameyer, Julie Dagenais, Renee Breeden, Allison Beale

Retrospective analysis of estrogenic endocrine disruption and land-use influences in the Chesapeake Bay watershed

The Chesapeake Bay is the largest estuary in the United States and its watershed includes river drainages in six states and the District of Columbia. Sportfishing is of major economic interest, however, the rivers within the watershed provide numerous other ecological, recreational, cultural and economic benefits, as well as serving as a drinking water source for millions of people. Consequently,
Authors
Vicki S. Blazer, Stephanie Gordon, Daniel Jones, Luke R. Iwanowicz, Heather L. Walsh, Adam Sperry, Kelly L. Smalling

Reproduction and denning by San Clemente Island Foxes: Age, sex, and polygamy

Channel Island foxes (Urocyon littoralis) live on six of the eight California Channel Islands, and each island is inhabited by a distinct subspecies. Until recently, four of these subspecies were listed under the Endangered Species Act as endangered. Although three of the four subspecies have been delisted, and one subspecies was downlisted to threatened, all subspecies are still vulnerable becaus
Authors
Emily E. Hamblen, William F. Andelt, Thomas R. Stanley

Impacts of environmental conditions on fleas in black-tailed prairie dog burrows

Sylvatic plague, caused by the bacterium Yersinia pestis and transmitted by fleas, occurs in prairie dogs of the western United States. Outbreaks can devastate prairie dog communities, often causing nearly 100% mortality. Three competent flea vectors, prairie dog specialists Oropsylla hirsuta and O. tuberculata, and generalist Pulex simulans, are found on prairie dogs and in their burrows. Fleas a
Authors
Julia E. Poje, Tonie E. Rocke, Michael D. Samuel

Brood parasitism of greater sage-grouse by California Quail in Idaho

We describe a case of brood parasitism of a Greater Sage-Grouse (Centrocercus urophasianus; hereafter, sage-grouse) nest by California Quail (Callipepla californica; hereafter, quail) in southwestern Idaho during 2019. We observed one quail egg in the parasitized nest; the egg partially hatched, but the chick was dead upon the final nest check. Of the 6 sage-grouse eggs in the nest, only 2 hatched
Authors
Jordan C. Rabon, Sarah E McIntire, Peter S. Coates, Mark A. Ricca, Tracey N. Johnson

Lock operations influence upstream passages of invasive and native fishes at a Mississippi River high-head dam

Asian carps continue to expand their range in North America, necessitating efforts to limit the spread and establishment of reproducing populations. Mississippi River Lock and Dam 19 is a high-head dam that represents a population ‘pinch-point’ as passage through the lock chamber is the only means by which fishes can complete upstream movement. As such, this location could be a pivotal control poi
Authors
Andrea K. Fritts, Brent C. Knights, Jessica C. Stanton, Amanda S. Milde, Jonathan M. Vallazza, Marybeth K. Brey, Sara J. Tripp, Thomas E. Devine, Wesley Sleeper, James T. Lamer, Kyle J. Mosel

Behavioral responses of sea lamprey (Petromyzon marinus) and white sucker (Catostomus commersonii) to turbulent flow during fishway passage attempts

An understanding of how undesirable and desirable fish species respond behaviorally to turbulent flow in fishways would guide development of selective fish passage techniques. We applied high-resolution computational fluid dynamics modeling and competing risks analysis towards the development of predictive selective passage models. Sea lamprey (Petromyzon marinus; an invasive fish in the Great Lak
Authors
Sean A. Lewandoski, Peter J. Hrodey, Scott M. Miehls, Paul Piszczek, Daniel Zielinski

Seabird synthesis

Overall, the status of seabirds was fair to good in the WGOA in 2020, with limited data available from Middleton Island, Cook Inlet, and the Kodiak Archipelago (Figure 63). Colony attendance remains low in some populations compared to historic levels, and some colonies were newly abandoned. However, when birds did arrive to breed, reproductive success generally appeared fair to good for fish-eatin
Authors
Mayumi L. Arimitsu, Hillary K. Burgess, Robin Corcoran, Scott Hatch, Tim Jones, Jackie Lindsey, Caitlin Elizabeth Marsteller, John F. Piatt, Sarah K. Schoen

Divergent movement patterns of adult and juvenile ‘Akohekohe, an endangered Hawaiian Honeycreeper

The movement patterns of birds across a landscape are often highly variable and influenced by complex interactions between individuals and environments. Because periods of movement can be marked by high mortality, especially among juvenile birds, understanding these patterns may be vital for the conservation of many bird species. However, these patterns can be challenging to quantify. We used radi
Authors
Alex X Wang, Eben H. Paxton, Hanna L Mounce, P. Marcos Gorresen

Water temperature controls for regulated canyon-bound rivers

Many canyon‐bound rivers have been dammed and downstream flow and water temperatures modified. Climate change is expected to cause lower storage in reservoirs and warmer release temperatures, which may further alter downstream flow and thermal regimes. To anticipate potential future changes, we first need to understand the dominant heat transfer mechanisms in canyon‐bound river systems. Towards th
Authors
Bryce A. Mihalevich, Bethany Neilson, Caleb A. Buahin, Charles Yackulic, John C. Schmidt

Ancient Egyptian mummified shrews (Mammalia: Eulipotyphla: Soricidae) and mice (Rodentia: Muridae) from the Spanish Mission to Dra Abu el-Naga, and their implications for environmental change in the Nile valley during the past two millennia

Excavation of Ptolemaic Period (ca. 309–30 BC) strata within Theban Tombs 11, 12, -399-, and UE194A by the Spanish Mission to Dra Abu el-Naga (also known as the Djehuty Project), on the west bank of the Nile River opposite Luxor, Egypt, yielded remains of at least 175 individual small mammals that include four species of shrews (Eulipotypha: Soricidae) and two species of rodents (Rodentia: Muridae
Authors
Neal Woodman, Salima Ikram