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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41778

How "simple" methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish

Reduced representation (RRL) sequencing approaches (e.g., RADSeq, genotyping by sequencing) require decisions about how much to invest in genome coverage and sequencing depth, as well as choices of values for adjustable bioinformatics parameters. To empirically explore the importance of these “simple” methodological decisions, we generated two independent sequencing libraries for the same 142 indi
Authors
Carly F. Graham, Douglas R. Boreham, Richard G. Manzon, Wendylee Stott, Joanna Y. Wilson, Christopher M. Somers

Herpetofauna occupancy and community composition along a tidal swamp salinity gradient

Occupancy patterns of herpetofauna in most tidal freshwater swamps are unknown. Tidal freshwater swamps currently face multiple threats, including salinization, which can influence their associated plant and animal communities. The impacts of salinization to herpetofauna communities in tidal freshwater swamps have not been assessed. To improve predictions regarding these herpetofauna, we conducted
Authors
Sidney T Godfrey, J. Hardin Waddle, Robert F Baldwin, William H. Conner, William C Bridges, Jamie A. Duberstein

Uptake, metabolism, and elimination of fungicides from coated wheat seeds in Japanese quail (Coturnix japonica)

Pesticides coated to the seed surface potentially pose an ecological risk to granivorous birds that consume incompletely buried or spilled seeds. To assess the toxicokinetics of seeds treated with current-use fungicides, Japanese quail (Coturnix japonica) were orally dosed with commercially coated wheat seeds. Quail were exposed to metalaxyl, tebuconazole, and fludioxonil at either a low (0.07, 0.
Authors
Michael S. Gross, Thomas G. Bean, Michelle Hladik, Barnett A. Rattner, Kathryn Kuivila

Tidal wetland gross primary production across the continental United States, 2000–2019

We mapped tidal wetland gross primary production (GPP) with unprecedented detail for multiple wetland types across the continental United States (CONUS) at 16‐day intervals for the years 2000–2019. To accomplish this task, we developed the spatially explicit Blue Carbon (BC) model, which combined tidal wetland cover and field‐based eddy covariance tower data into a single Bayesian framework, and u
Authors
R.A. Feagin, I. Forbrich, T. P. Huff, J.G. Barr, J. Ruiz-Plancarte, J.D. Fuentes, R.G. Najjar, R. Vargas, A. Vazquez Lule, L. Windham-Myers, Kevin D. Kroeger, E. J. Ward, G. W. Moore, M. Leclerc, K. W. Krauss, C.L. Stagg, M. Alber, S. H. Knox, K. V. R. Schafer, T.S. Bianchi, J. A. Hutchings, H. Nahrawi, A. Noormets, B. Mitra, A. Jaimes, A.L. Hinson, Brian A. Bergamaschi, J.S. King, G. Miao

Evaluating contributions of recent tracking-based animal movement ecology to conservation management

The use of animal-born sensors for location-based tracking and bio-logging in terrestrial systems has expanded dramatically in the past 10 years. This rapid expansion has generated new data on how animals interact with and respond to variation in their environment, resulting in important ecological, physiological, and evolutionary insights. Although understanding the finer details of animal locati
Authors
Todd E. Katzner, Raphaël Arlettaz

The clock keeps ticking: Circadian rhythms of free-ranging polar bears

Life in the Arctic presents organisms with multiple challenges, including extreme photic conditions, cold temperatures, and annual loss and daily movement of sea ice. Polar bears (Ursus maritimus) evolved under these unique conditions, where they rely on ice to hunt their main prey, seals. However, very little is known about the dynamics of their daily and seasonal activity patterns. For many orga
Authors
Jasmine V. Ware, Karyn D. Rode, Charles T. Robbins, T. Leise, C.R. Weil, Heiko T. Jansen

Website usability differences between males and females: An eye-tracking evaluation of a climate decision support system

Decision support systems, which are collections of related information located in a central place, can be used as platforms from which climate information can be shared with decision-makers. In this study, a web-based climate decision support system (DSS) for foresters in the Southeast United States was evaluated using eye-tracking technology. The initial study design was exploratory and focused o
Authors
Lindsay C. Mauldin, Karen McNeal, Heather D Aldridge, Corey Davis, Ryan Boyles, Rachel M. Atkins

The historical context of contemporary climatic adaptation: A case study in the climatically dynamic and environmentally complex southwestern United States

The process of adaptation can be highly dependent upon historical and contemporary factors, especially in environmentally and topographically complex regions affected by Pleistocene glaciations. Here, we investigate Hilaria jamesii (Poaceae), a dryland C4 graminoid, to test how patterns of adaptive genetic variation are linked to its glacial and post‐glacial history. We show that the species persi
Authors
Robert Massatti, L. Lacey Knowles

Final Alabama Barrier Island restoration assessment report, appendix A: Data management plan

The Alabama Barrier Island Restoration Assessment project focused exclusively on Dauphin Island, a significant barrier island along the northern Gulf of Mexico. This restoration feasibility study effort required data collection and analysis of many data types (e.g., hydro, sediment, currents, etc.) through the project’s life cycle to assess restoration measures and their effects on the sustainabil
Authors
Christina B. Hunnicutt, Craig Conzelmann

Molecular sequencing and morphological identification reveal similar patterns in native bee communities across public and private grasslands of eastern North Dakota

Bees play a key role in the functioning of human-modified and natural ecosystems by pollinating agricultural crops and wild plant communities. Global pollinator conservation efforts need large-scale and long-term monitoring to detect changes in species’ demographic patterns and shifts in bee community structure. The objective of this project was to test a molecular sequencing pipeline that would u
Authors
Brian Darby, Russ Bryant, Abby Keller, Madison Jochim, Josephine Moe, Zoe Schreiner, Carrie Pratt, Ned Euliss, Mia Park, Rebecca Simmons, Clint R.V. Otto

Response to terrestrial nest predators among endemic and introduced Hawaiian birds

Birds free from nest predators for long periods may either lose the ability to recognize and respond to predators or retain antipredator responses if they are not too costly. How these alternate scenarios play out has rarely been investigated in an avian community whose members have different evolutionary histories. We presented models of two nest predators (rat and snake) and a negative control (
Authors
George C Cummins, Tad C Theimer, Eben H. Paxton

Behavioral responses of sea lamprey to varying application rates of a synthesized pheromone in diverse trapping scenarios

Use of the first fish pheromone biopesticide, 3-keto petromyzonol sulfate (3kPZS) in sea lamprey (Petromyzon marinus) control requires an understanding of both how the amount 3kPZS applied to a trap relates to catch, and how that relationship varies among stream types. By conducting 3kPZS dose-response experiments over two years and across six varied trapping contexts, we conclude (1) that 3kPZS a
Authors
Nicholas S. Johnson, Sean A. Lewandoski, Bethany Alger, Lisa M. O'Connor, Gale Bravener, Peter J. Hrodey, Belinda Huerta, Jessica Barber, Weiming Li, C. Michael Wagner, Michael J Siefkes